Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0186
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 104 6e-23
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 103 2e-22
02_02_0470 - 10700092-10700505 30 2.1
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 2.8
10_08_0951 - 21769342-21769752 29 4.9
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 29 4.9
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 8.6
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 104 bits (250), Expect = 6e-23
Identities = 75/176 (42%), Positives = 97/176 (55%), Gaps = 7/176 (3%)
Frame = +2
Query: 215 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 379
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 380 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDY 559
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 560 FXXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDDAGIKAIGARPD 721
F EG ++F T+KE K +P + +K DQK VD IKAI PD
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD 197
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 103 bits (246), Expect = 2e-22
Identities = 70/156 (44%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 266 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 440 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDI 619
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 620 FATKKE--KYVPSEQRKTDQKTVDDAGIKAIGARPD 721
F T+KE K +P E +K DQK VD IKAI A PD
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD 220
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 341 LKIGTVCILLAGRHAGKRVVLVGILPSG 424
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 474 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 599
AFL+ + PP + H C N S++I R + N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 341 LKIGTVCILLAGRHAGKRVVLVGILPSG 424
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Frame = +3
Query: 447 LHSIRARYAAFLS-AM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKR---VM 614
+ S RA+ A A+ S+P S +N+S +S R+ASN N+ R V
Sbjct: 121 VQSERAKVDAMKKPAVKSSPISTLKKVPSLTENSSSSASSSFRRAASNATLNSPRSPSVT 180
Query: 615 TSLPQK---KRNTFHLSSAKPIRRQSTMLGSKPS 707
+S+ +K + ++ S+ PIR++S+ S+ S
Sbjct: 181 SSVTKKVGSRTSSMDKGSSMPIRKKSSTADSRDS 214
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 205 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 303
W+ E Q+++P ++ L H+G+ C++WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,218
Number of Sequences: 37544
Number of extensions: 441876
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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