Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0186
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               69   3e-12
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   8.8  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 40/94 (42%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +2

Query: 443 PFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDI 619
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ +                +D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56

Query: 620 FATKKEKYVPSEQRKTDQKTVDDAGIKAIGARPD 721
           F    E+  PSEQR  DQK VDD  +  I A P+
Sbjct: 57  FEEAAEEKKPSEQRIADQKAVDDQILPKISAVPN 90


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 464 PLRRIPQRYVICTSTR 511
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 226 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 342
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 464 PLRRIPQRYVICTSTR 511
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 464 PLRRIPQRYVICTSTR 511
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 228 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 335
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,770,960
Number of Sequences: 59808
Number of extensions: 477525
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)