Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0186
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   113   1e-25
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    33   0.21 
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    33   0.21 
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.83 

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  113 bits (272), Expect = 1e-25
 Identities = 64/132 (48%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
 Frame = +2

Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 505
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 506 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 685
            ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 686 DAGIKAIGARPD 721
              + AI   P+
Sbjct: 181 APILAAIKKHPE 192



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 65  RNYDLGNGVMRFSKSKMFHKKAKYK 139
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 519 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGS 698
           +  +N   TS   ++    SA+N  +      T+  Q    TF+  +   I   ST+ GS
Sbjct: 7   AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64

Query: 699 KPSEPDP 719
           +PS+P P
Sbjct: 65  QPSQPPP 71


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 519 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGS 698
           +  +N   TS   ++    SA+N  +      T+  Q    TF+  +   I   ST+ GS
Sbjct: 7   AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64

Query: 699 KPSEPDP 719
           +PS+P P
Sbjct: 65  QPSQPPP 71


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 573 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKPS 707
           RSA +V+    +V+  + +  R + HLS+++PI  +S   GS P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 394
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,258
Number of Sequences: 27780
Number of extensions: 350026
Number of successful extensions: 937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)