BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0186 (721 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 113 1e-25 AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 33 0.21 AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 33 0.21 Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 32 0.36 Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.83 >U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein, large subunitprotein 6 protein. Length = 217 Score = 113 bits (272), Expect = 1e-25 Identities = 64/132 (48%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Frame = +2 Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 505 +R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126 Query: 506 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 685 ++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180 Query: 686 DAGIKAIGARPD 721 + AI P+ Sbjct: 181 APILAAIKKHPE 192 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 65 RNYDLGNGVMRFSKSKMFHKKAKYK 139 RN+DL GV+RFS S++ KK + K Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36 >AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like serine/threonine kinase protein. Length = 596 Score = 33.1 bits (72), Expect = 0.21 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 519 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGS 698 + +N TS ++ SA+N + T+ Q TF+ + I ST+ GS Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64 Query: 699 KPSEPDP 719 +PS+P P Sbjct: 65 QPSQPPP 71 >AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical protein Y59A8B.23 protein. Length = 596 Score = 33.1 bits (72), Expect = 0.21 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 519 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGS 698 + +N TS ++ SA+N + T+ Q TF+ + I ST+ GS Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64 Query: 699 KPSEPDP 719 +PS+P P Sbjct: 65 QPSQPPP 71 >Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical protein F31B12.2 protein. Length = 1089 Score = 32.3 bits (70), Expect = 0.36 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +3 Query: 573 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKPS 707 RSA +V+ +V+ + + R + HLS+++PI +S GS P+ Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408 >Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical protein C54C8.12 protein. Length = 82 Score = 31.1 bits (67), Expect = 0.83 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 394 FYPT+ +A S G P + PN ++ V A RHAG R Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,775,258 Number of Sequences: 27780 Number of extensions: 350026 Number of successful extensions: 937 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 935 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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