Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0186
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 113 1e-25
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 113 1e-25
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 110 8e-25
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.8
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 29 4.1
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 29 4.1
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 4.1
At2g27270.1 68415.m03277 expressed protein 28 5.4
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote... 27 9.5
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 27 9.5
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 113 bits (271), Expect = 1e-25
Identities = 80/219 (36%), Positives = 112/219 (51%)
Frame = +2
Query: 65 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 244
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 245 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 424
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 425 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 604
LLLVTGPF N PLRR+ Q YVI TST++ + L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172
Query: 605 EGDDIFATKKEKYVPSEQRKTDQKTVDDAGIKAIGARPD 721
EG+ A K+EK + +K DQK VD A IKAI A P+
Sbjct: 173 EGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE 211
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 113 bits (271), Expect = 1e-25
Identities = 80/219 (36%), Positives = 112/219 (51%)
Frame = +2
Query: 65 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 244
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 245 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 424
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 425 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 604
LLLVTGPF N PLRR+ Q YVI TST++ + L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172
Query: 605 EGDDIFATKKEKYVPSEQRKTDQKTVDDAGIKAIGARPD 721
EG+ A K+EK + +K DQK VD A IKAI A P+
Sbjct: 173 EGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE 211
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 110 bits (265), Expect = 8e-25
Identities = 79/219 (36%), Positives = 111/219 (50%)
Frame = +2
Query: 65 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 244
RN DL GV ++S+S+M+HK+ + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58
Query: 245 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 424
++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
Query: 425 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 604
LLLVTGPF N PLRR+ Q YVI TST+I + K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKKKT 172
Query: 605 EGDDIFATKKEKYVPSEQRKTDQKTVDDAGIKAIGARPD 721
EG+ A K+EK +++K DQKTVD A IK+I A P+
Sbjct: 173 EGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPE 211
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 239 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 328
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/73 (32%), Positives = 30/73 (41%)
Frame = +3
Query: 501 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ 680
P PE A S+ T+ TS I S+ SN +S P K H S +PI
Sbjct: 134 PEPESQPAKSSAVITNAPATSSLIPWISS--SNPSTEKSSSPLKHH---HQVSVQPITTN 188
Query: 681 STMLGSKPSEPDP 719
T L +PS P
Sbjct: 189 PTFLAKQPSSTTP 201
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/73 (32%), Positives = 30/73 (41%)
Frame = +3
Query: 501 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ 680
P PE A S+ T+ TS I S+ SN +S P K H S +PI
Sbjct: 57 PEPESQPAKSSAVITNAPATSSLIPWISS--SNPSTEKSSSPLKHH---HQVSVQPITTN 111
Query: 681 STMLGSKPSEPDP 719
T L +PS P
Sbjct: 112 PTFLAKQPSSTTP 124
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 205 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 306
W+ E Q ++PQ V L H G+ C++WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 445
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 446 FAFNSCPLR-RIPQ 484
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
kinase, putative similar to CLV1 receptor kinase
GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
Length = 601
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +1
Query: 382 CRQEGCTCWNSAQRSAFSYWTFCIQFVPATPHSSALC 492
C+ G +CWN + S +Q P S LC
Sbjct: 59 CKLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLC 95
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 495 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 674
S PP +S Q + + T + AS ++K MTS Q ++N F + S +
Sbjct: 1082 SWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTRMTSAQQHEQNIFRMFSVGAVS 1141
Query: 675 RQS 683
+S
Sbjct: 1142 NES 1144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,351
Number of Sequences: 28952
Number of extensions: 331972
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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