Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    27   0.19 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    27   0.19 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.7  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   3.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   3.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.3  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 199 SPRSRT-LAAPSPVRPPYSWAALKATQTQ 282
           SP+ +T +A P P R PY W    + Q+Q
Sbjct: 107 SPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 199 SPRSRT-LAAPSPVRPPYSWAALKATQTQ 282
           SP+ +T +A P P R PY W    + Q+Q
Sbjct: 107 SPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  IFLNCLCIWCVLRLYHLLRA 146
           I + CLCIW +   ++  R+
Sbjct: 50  ITIGCLCIWSIFNKWNQFRS 69


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 458 YNCLRFLALSPYNLLEEV 405
           ++CL  L ++PY LL EV
Sbjct: 276 FSCLLHLVVTPYYLLIEV 293


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  EISFLIPRIFLNCLCIWCVLRLYHLLRAG 149
           E+S+LI    +   C W +  LY++LR G
Sbjct: 356 ELSYLI-LFSIGFNCFWVMKLLYNVLRFG 383


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 270 RFQRRPGVGRSHRAGSGESPAPRGGA 193
           R+  RP  GRS R    + P  + GA
Sbjct: 198 RYSDRPSSGRSPRTRRVKKPGAKQGA 223


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 184 DYCRPSPRSRTLAAPSPVRPPYSWAAL 264
           D  + SP   +    S  +PPYS+ AL
Sbjct: 65  DCSKNSPEKESEEKKSKEKPPYSYNAL 91


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 196 PSPRSRTLAAPSPVRPP---YSWAALKATQTQ-AYMNYDVSCTCFSVTGFI 336
           P P  +  A P+P + P   Y         T  +Y N DVSCT +    +I
Sbjct: 330 PPPPYQISAQPTPSQSPNQIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYI 380


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 226 PSPVRPPYSWAALK 267
           P PV P Y W  +K
Sbjct: 190 PQPVLPTYKWMQVK 203


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 226 PSPVRPPYSWAALK 267
           P PV P Y W  +K
Sbjct: 190 PQPVLPTYKWMQVK 203


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 226 PSPVRPPYSWAALK 267
           P PV P Y W  +K
Sbjct: 190 PQPVLPTYKWMQVK 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,551
Number of Sequences: 336
Number of extensions: 3163
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)