Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    28   1.4  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.9  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   7.6  

>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 402 KTYKIRDILMCHDRRVQNLTINNKTCHRKARTRNVIVH 289
           K  K+ D  MCH +    +  N K  H +  + N I H
Sbjct: 335 KLLKVLDASMCHSKAAPTIGYNIKPKHAEGYSSNEITH 372


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 630 HSLKTKTVKSSNFRDNI-MITENXRLNSKTSFNSKIIETNRQKFRQ*FITFSNQIYPTLQ 454
           HS    + KS  F  +  +++EN  L +++  NS IIE N++         +N + PT  
Sbjct: 355 HSTNNLSSKSGKFHSDFRVVSENVLLQARSETNSPIIE-NKEA--------NNFLAPTSN 405

Query: 453 LPSFSS 436
           +P++S+
Sbjct: 406 VPAYST 411


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 131 PLAASRRHLEGCGANRAVTTAAPP 202
           P+   + H++    +R +TTA+PP
Sbjct: 261 PMNVCKAHIQASNQSRTLTTASPP 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,754
Number of Sequences: 5004
Number of extensions: 50457
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)