Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0185
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1069 + 23743031-23744062 31 0.85
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800 30 2.0
03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233 29 2.6
10_08_0975 - 21978642-21979520 29 3.4
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 29 3.4
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 29 3.4
08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636... 29 4.5
03_03_0278 - 16126803-16129049 29 4.5
02_05_0212 - 26808484-26809368 29 4.5
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 6.0
04_03_1017 + 21747044-21748051 28 6.0
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 28 6.0
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 28 6.0
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 28 7.9
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 28 7.9
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 7.9
03_01_0573 + 4230875-4231432 28 7.9
>07_03_1069 + 23743031-23744062
Length = 343
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = +1
Query: 100 AFASGVSCGFTTCCEPASPGRVRCQ*SCDYCRPSPRSRTLAAPSPVRPPYSWAALKATQT 279
A A+GV+ G A+ RV CQ CR R R P PV PP A K +
Sbjct: 31 AAAAGVTGGGDGAAAVAATNRVLCQLQSRPCRARKRGRPSVVP-PVSPP---AGAKRKRA 86
Query: 280 QAY 288
AY
Sbjct: 87 PAY 89
>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
Length = 239
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 82 REYF*IAFASGVSCGFTTCCEPASPGRVRCQ*SCDYCRPSPRSRTLAAPSPVRPPYSWAA 261
R + +A A + CG C P P +C+ C P AA + VR P +WA+
Sbjct: 55 RAFVTVADADALECG--VCRLPLRPPVFQCEDGHVVCSPCRDKLAAAAAAAVRWPCAWAS 112
>03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233
Length = 305
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -1
Query: 264 QRRPGVGRSHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAA 121
+R P GSG S P T L PH R RRLA SG A
Sbjct: 15 RRLPSKQPGRHGGSGSSSVPNPYPLFATTRLLPHRRR-RRLALSGADA 61
>10_08_0975 - 21978642-21979520
Length = 292
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 267 FQRRPGVGRSHRAGSGESPAPRG 199
F R P VG + AG G+ P PRG
Sbjct: 95 FFRTPQVGPARAAGGGDEPEPRG 117
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 252 GVGRSHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAGHTRC 106
G G RA G +P P AAV +LLA P A+ G G C
Sbjct: 15 GGGGGRRASPGSAPPPAAPAAVAYSLLATSPP-----ASIGNGGGSPHC 58
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 240 SHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAGHTRCKGNLEIFS 82
S +GS +SPAP A+ A H + + GH RC IFS
Sbjct: 56 SSSSGSAKSPAPSNAGALALAGGRSHSGELTAESTPPRLPGHRRCGSGPLIFS 108
>08_02_1004 -
23461798-23462024,23462340-23462415,23463479-23463610,
23463927-23464004,23464919-23465320
Length = 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 213 PAPRGG-AAVVTALLAPHPSR*RRLAASGKAAGHTR 109
P PR AAV+T+LL P P LA +G AA R
Sbjct: 7 PPPRAAIAAVLTSLLPPPPGASASLAPAGPAAAVAR 42
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = +1
Query: 196 PSPRSRTLAAPSPVRPPYSWAA-----LKATQTQAYMNYDVSC-TC 315
P P R AP P +PP W + + + Y+N+++ C TC
Sbjct: 189 PPPPPRQAPAPPPAKPPTFWTSCNKCKMNYEYLKVYLNHNLLCPTC 234
>02_05_0212 - 26808484-26809368
Length = 294
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 382 HLNVSRSTRPKSDNKQ*NLSQKSTYKKRHSSCKLASVSLSTPP 254
H NVS S+ S K S+ S K R K ASV S+PP
Sbjct: 49 HKNVSSSSSSSSKAKPAASSKVSPAKPRKPKAKAASVPPSSPP 91
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 264 QRRPGVGRSHRAGSGESPAPRGGAAVVTA 178
+RR G GR RAG+G P AVV A
Sbjct: 72 RRRGGRGRGGRAGAGPGPGLAAAPAVVVA 100
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 145 PASPGRVRCQ*SCDYCRPSPRSRTLAAP--SPVRPP 246
PASP R S DY SP R A+P SP PP
Sbjct: 164 PASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPP 199
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 291 HVSLRLCRFQRRPGVGRSHRAGSGES-PAPRGGAAVVTALLAPHPSR*RRLAASGKAAGH 115
H+ LRL R +RR + R GSG A GAA+ +LA H AA AA
Sbjct: 338 HLDLRLLRARRRRRLVRCATRGSGICLIACATGAAIAGLVLATHAITVLLAAAPACAASR 397
Query: 114 TRC 106
C
Sbjct: 398 GSC 400
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 154 PGRVRCQ*SCDYCRPSPRSRTLAAPSPVRPPYSWAALKATQTQAYMNYDVSCTCFSVTGF 333
P R RC + P + + AP PV+PP S ++L T + + V+ F T +
Sbjct: 40 PARFRC--CAEPSSPEQENPSTPAPPPVKPPASPSSLWGISTSTW-SAGVAGLGFLETAY 96
Query: 334 IVYCQI 351
+ Y ++
Sbjct: 97 LSYIKL 102
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/18 (66%), Positives = 17/18 (94%), Gaps = 1/18 (5%)
Frame = +2
Query: 179 AVTTAAPPRGAG-LSPLP 229
A+++AAPPRGAG L+P+P
Sbjct: 694 AMSSAAPPRGAGFLAPVP 711
>05_03_0294 + 11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 243 RSHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAGHTRCKG 100
R R GE+P P GG +TA + P P+ + A GH G
Sbjct: 933 RPGREQGGEAPEPNGGPRSLTAGVGPPPACPKVPGAPDPQDGHGATTG 980
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 243 RSHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGK 127
R HR+ + APR G A TA + HP +A +GK
Sbjct: 55 RPHRSQKPQQAAPRAGRAEATANRS-HPQSGNAIAGAGK 92
>03_01_0573 + 4230875-4231432
Length = 185
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 187 YCRPSPRSRTLAAPSPVRPPYSWAALKATQTQA 285
Y RPSP + P + P SW L A+ + A
Sbjct: 143 YARPSPAETKASEPEEKKTPTSWLDLAASASAA 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,694,607
Number of Sequences: 37544
Number of extensions: 367248
Number of successful extensions: 1426
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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