Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 30   1.5  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   28   6.0  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 489  ITFSNQIYPTLQLPSFSSTIPLQSA*RG*KTYKIRDILMCHDRRVQNLTINNKTCHRKAR 310
            IT   Q     ++ S ++  P Q+  +G +++K R   + HDR   N T  N TCHR+  
Sbjct: 835  ITRPEQSQEIKEIDSLNARAPTQNQNKG-QSFKCRFCGLQHDRG--NCTAYNATCHRRKV 891

Query: 309  T 307
            T
Sbjct: 892  T 892


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 663 KNKKNHETAFGHSLKT--KTVKSSNFRDNIMITENXRLNSKTSFNSKIIETNRQK 505
           K K +H+T    + KT  KT  SSN + ++  T+  R N+KTS N+K    ++ K
Sbjct: 75  KTKTSHKTKTSRNTKTSRKTKTSSNTKTSLK-TKTSR-NTKTSRNTKTKPQDKNK 127


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 187 YCRPSPRSRTLAAPSPVRPPYSWAALKATQTQA 285
           Y  P PRS+       V+PPYS+ AL A   Q+
Sbjct: 41  YGPPLPRSQHPTRQDMVKPPYSYIALIAMAIQS 73


>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = -1

Query: 663 KNKKNHETAFGHSLKTKTVKSSNFRDNIMITENXRLNSKTSFNSKIIETNRQKFRQ*FIT 484
           K  KN+ T    +   K  K+ + +     TEN    +  ++++K IE    K  + +IT
Sbjct: 275 KATKNYSTKATENYSNKATKNYSTK----ATENYSTKAIENYSNKAIENYSTKATENYIT 330

Query: 483 FSNQIYPTLQLPSFSS 436
            + + Y T  + ++S+
Sbjct: 331 KARENYSTKAIENYST 346


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 403 ENLQNKRHLNVSRST-RPKSDNKQ*NLSQKSTYKKRHSSCKLASVSLSTPPRS 248
           +++  ++ +  SRS  R + D KQ    Q S  KKR  +C +  VS    PRS
Sbjct: 677 QSIDLRKEIERSRSLKREREDVKQ---EQDSPLKKRLGNCSVTPVSQGVSPRS 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,760
Number of Sequences: 59808
Number of extensions: 399453
Number of successful extensions: 1209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)