Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    25   2.2  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   2.2  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    24   5.1  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   6.7  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    23   6.7  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   6.7  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   8.9  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   8.9  

>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 190 CRPSPRSRTLAAPSPVRPPYSW 255
           C  +P+   L +  PVR P+ W
Sbjct: 413 CNSNPKDYLLYSRDPVRTPFQW 434


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 226 PSPVRPPYSWAALKATQTQ 282
           P+PV+ PY W   ++ Q+Q
Sbjct: 188 PTPVKSPYEWMKKQSYQSQ 206


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 327 CHRKARTRNVIVHVSLRLC 271
           CHR   +RN++V   L  C
Sbjct: 370 CHRDLNSRNILVKSDLSCC 388


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 252  GVGRSHRAGSGESPAPRGGAAVVTA 178
            GV  +     G + AP GGAAV  A
Sbjct: 1505 GVSEAPPGTDGAAAAPTGGAAVTNA 1529


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 204 RGGAAVVTALLAPHPS 157
           RGGAA+ TA  +P PS
Sbjct: 171 RGGAAIRTAPASPFPS 186


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 204 RGGAAVVTALLAPHPS 157
           RGGAA+ TA  +P PS
Sbjct: 176 RGGAAIRTAPASPFPS 191


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 184 DYCRPSPRSRTLAAPSPVRP 243
           DY  P+P+++T   P+  RP
Sbjct: 409 DYVAPTPKAKTHICPTCKRP 428


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 666 KKNKKNHETAFGHSLKTKTVKSSNFRDNIMITENXRLNSKTSFNSK 529
           KKNK+     FG + KT T  +    D+I+  ++ R++   S  ++
Sbjct: 320 KKNKEAERKVFGKTEKTSTCSA----DDIIELQDIRMSPIASLRNR 361


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,130
Number of Sequences: 2352
Number of extensions: 13402
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)