Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023324-1|BAB14527.1|  190|Homo sapiens protein ( Homo sapiens ...    36   0.17 
S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.           31   3.8  
M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.           31   3.8  
AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor r...    31   3.8  
AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor r...    31   3.8  
AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30 ...    31   3.8  
X94438-1|CAA64212.2|  427|Homo sapiens transcription factor prot...    30   8.7  
BC015497-1|AAH15497.2|  434|Homo sapiens TEA domain family membe...    30   8.7  
AK222947-1|BAD96667.1|  434|Homo sapiens TEA domain family membe...    30   8.7  

>AK023324-1|BAB14527.1|  190|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13262 fis, clone OVARC1000912. ).
          Length = 190

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -1

Query: 246 GRSHRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAG 118
           GR H  G G  PAPR  + +  A  AP P+R RR  A     G
Sbjct: 80  GRRHHGGGGSRPAPRRKSPLPAAARAPSPARPRRPHACRDGGG 122


>S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 TCCEPASPGRVRCQ*SCDYCR-PSPRSRTLAAPSPVRPPYSWAA 261
           T CEPASPG      S + C+ PS  +   A P+PV P  S A+
Sbjct: 147 TVCEPASPGVSPACASPENCKEPSSGTIPQAKPTPVSPATSSAS 190


>M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 TCCEPASPGRVRCQ*SCDYCR-PSPRSRTLAAPSPVRPPYSWAA 261
           T CEPASPG      S + C+ PS  +   A P+PV P  S A+
Sbjct: 147 TVCEPASPGVSPACASPENCKEPSSGTIPQAKPTPVSPATSSAS 190


>AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 TCCEPASPGRVRCQ*SCDYCR-PSPRSRTLAAPSPVRPPYSWAA 261
           T CEPASPG      S + C+ PS  +   A P+PV P  S A+
Sbjct: 147 TVCEPASPGVSPACASPENCKEPSSGTIPQAKPTPVSPATSSAS 190


>AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 TCCEPASPGRVRCQ*SCDYCR-PSPRSRTLAAPSPVRPPYSWAA 261
           T CEPASPG      S + C+ PS  +   A P+PV P  S A+
Sbjct: 147 TVCEPASPGVSPACASPENCKEPSSGTIPQAKPTPVSPATSSAS 190


>AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30
           protein.
          Length = 595

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 TCCEPASPGRVRCQ*SCDYCR-PSPRSRTLAAPSPVRPPYSWAA 261
           T CEPASPG      S + C+ PS  +   A P+PV P  S A+
Sbjct: 147 TVCEPASPGVSPACASPENCKEPSSGTIPQAKPTPVSPATSSAS 190


>X94438-1|CAA64212.2|  427|Homo sapiens transcription factor
           protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 236 TGLGAARVRLRGEGRQ*SQLYWHRTLPGDAGSQQVVKP 123
           T   ++    RG GR     +W   LPG AG+   VKP
Sbjct: 135 TAFHSSMALARGPGRPAVSGFWQGALPGQAGTSHDVKP 172


>BC015497-1|AAH15497.2|  434|Homo sapiens TEA domain family member 4
           protein.
          Length = 434

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 236 TGLGAARVRLRGEGRQ*SQLYWHRTLPGDAGSQQVVKP 123
           T   ++    RG GR     +W   LPG AG+   VKP
Sbjct: 142 TAFHSSMALARGPGRPAVSGFWQGALPGQAGTSHDVKP 179


>AK222947-1|BAD96667.1|  434|Homo sapiens TEA domain family member 4
           isoform 1 variant protein.
          Length = 434

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 236 TGLGAARVRLRGEGRQ*SQLYWHRTLPGDAGSQQVVKP 123
           T   ++    RG GR     +W   LPG AG+   VKP
Sbjct: 142 TAFHSSMALARGPGRPAVSGFWQGALPGQAGTSHDVKP 179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,553,439
Number of Sequences: 237096
Number of extensions: 1954234
Number of successful extensions: 6518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6493
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)