Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0185
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 31 1.00
Z81485-12|CAJ55255.1| 509|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81485-11|CAJ21556.1| 449|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81485-10|CAD44110.1| 486|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81485-9|CAB03981.3| 498|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL022275-5|CAJ55250.1| 509|Caenorhabditis elegans Hypothetical ... 29 4.0
AL022275-4|CAJ21562.1| 449|Caenorhabditis elegans Hypothetical ... 29 4.0
AL022275-3|CAD44158.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.0
AL022275-2|CAA18361.3| 498|Caenorhabditis elegans Hypothetical ... 29 4.0
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 9.3
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 30.7 bits (66), Expect = 1.00
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 IIFNTENISKLPLHLVCPAALPLAASRRHLEGCGANRAVTTAAPP--RGAGLSPLPAL*D 241
+ F + PL+ C AA+P AA C A+ + TAA P A +PLPA
Sbjct: 11 LAFTAAQVPVAPLYSACSAAVPCAAP----AVCQASVCIPTAAAPPMMMAPPAPLPAYAP 66
Query: 242 LPTP 253
P P
Sbjct: 67 APLP 70
>Z81485-12|CAJ55255.1| 509|Caenorhabditis elegans Hypothetical
protein W06B3.2c protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 345 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 382
>Z81485-11|CAJ21556.1| 449|Caenorhabditis elegans Hypothetical
protein W06B3.2d protein.
Length = 449
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 273 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 310
>Z81485-10|CAD44110.1| 486|Caenorhabditis elegans Hypothetical
protein W06B3.2b protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 322 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 359
>Z81485-9|CAB03981.3| 498|Caenorhabditis elegans Hypothetical
protein W06B3.2a protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 322 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 359
>AL022275-5|CAJ55250.1| 509|Caenorhabditis elegans Hypothetical
protein W06B3.2c protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 345 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 382
>AL022275-4|CAJ21562.1| 449|Caenorhabditis elegans Hypothetical
protein W06B3.2d protein.
Length = 449
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 273 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 310
>AL022275-3|CAD44158.1| 486|Caenorhabditis elegans Hypothetical
protein W06B3.2b protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 322 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 359
>AL022275-2|CAA18361.3| 498|Caenorhabditis elegans Hypothetical
protein W06B3.2a protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 321 CDRFYCLLSDFGRVDRDTLRCLLFCKFSNLFKQIVRG*C 437
CDR L+ DFGR ++FCK + QIVRG C
Sbjct: 322 CDRTRKLIQDFGRKADAEWDDIMFCK-ARGDDQIVRGNC 359
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 9.3
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Frame = +1
Query: 130 TTCCEPASPGR-------VRCQ*SCDYCRPSPRSRTLAAPSPVRPPYSWAALKATQTQAY 288
TTCC+P G C +C C RSRT A+ +P P + L TQ+ A
Sbjct: 1194 TTCCDPEKTGLWNDWGAWTTCSATCGGCGTQTRSRTCAS-APYGCPCT-GDLTETQSCAK 1251
Query: 289 MNYDVSCTC----FSVTGF--IVYCQ 348
C F TG+ YCQ
Sbjct: 1252 QVCTTGAQCCAGKFVATGYDGAQYCQ 1277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,016
Number of Sequences: 27780
Number of extensions: 304881
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -