Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0185
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12360.1 68416.m01541 ankyrin repeat family protein contains ...    32   0.40 
At5g07820.1 68418.m00896 expressed protein                             30   1.6  
At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly id...    28   4.9  
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai...    28   6.5  
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    27   8.6  
At1g55360.1 68414.m06327 expressed protein  contains Pfam profil...    27   8.6  
At1g17210.1 68414.m02097 expressed protein distantly related to ...    27   8.6  

>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 590

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = -1

Query: 396 YKIRDILMCHDRRV-QNLTINNKTCHRKARTRNVIVHVSLRLCRFQRRPGVGRSHRAGSG 220
           + I ++L+ HD  + Q    +N T    A  R     V+  L +      + RS+   + 
Sbjct: 177 HAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNAL 236

Query: 219 ESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAGHTRCKG 100
              A +G   V+ ALL+  P   RR+   G+ A H   KG
Sbjct: 237 HLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKG 276


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 412 KRLENLQNKRHLNVSRSTRPKSDNKQ*NLSQKSTYKKRHSSCKLASVSLSTPPRSRE 242
           +RL+NL+NK   N+    RP    ++     +S+ +K+       SV +S   +S E
Sbjct: 283 ERLKNLKNKEKTNIDEPVRPDDAVEKTLYVVESSVEKKKKKMSTKSVKISETQQSSE 339


>At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly
           identical to dynamin-like protein C [Arabidopsis
           thaliana] GI:19569772
          Length = 614

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 193 RPSPRSRTLAAPSPVRPPYSWAALK--ATQTQAYMNYDVSCTCFSVTGFIVYCQILDA 360
           +P+PR+    AP+P   PYS    +   +   AY+N        S+   +VYCQ+ +A
Sbjct: 504 KPNPRN----APAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREA 557


>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
           weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
           6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
           (Double minute 2 protein) (Swiss-Prot:P23804) [Mus
           musculus]
          Length = 785

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 663 KNKKNHETAFGHSLKTKTVKSSNFRDNI 580
           K KKN+++  G   K +T K +NF DN+
Sbjct: 189 KRKKNNKSRPGSPEKPRTRKGNNFSDNL 216


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 252 GVGRSHRA-GSGESPAPRGGAAVVTALLAPHPSR 154
           GVGR+  A GSG S AP+  +A +   +AP PSR
Sbjct: 306 GVGRTLGASGSGSSSAPQASSAPMN--VAPAPSR 337


>At1g55360.1 68414.m06327 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 78  IPRIFLNCLCIWCVLRLYHLLRAGVT 155
           + R FL CLC+W    L +  R+GV+
Sbjct: 12  LARGFLVCLCLWGFFSLSYAARSGVS 37


>At1g17210.1 68414.m02097 expressed protein distantly related to
           dentin phosphoryn [Homo sapiens] (GI:4322670)
          Length = 958

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 237 HRAGSGESPAPRGGAAVVTALLAPHPSR*RRLAASGKAAGHTRCKG 100
           H A S  +  P G A   + L  P PSR +  A+S KA+G+    G
Sbjct: 284 HSAQSARNGCPSGPARNQSRLQDPGPSRKQFSASSRKASGNYEVLG 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,551
Number of Sequences: 28952
Number of extensions: 271883
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)