Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0182
(669 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei... 194 2e-48
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 182 7e-45
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 163 5e-39
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 156 5e-37
UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotei... 127 3e-28
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 126 4e-28
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 121 2e-26
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 118 1e-25
UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium glob... 113 3e-24
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 89 9e-17
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 78 2e-13
UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like pr... 76 9e-13
UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 70 6e-11
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 67 3e-10
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 67 4e-10
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 64 4e-09
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 63 5e-09
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 50 5e-05
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 50 5e-05
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 49 9e-05
UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1; Bab... 48 2e-04
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 47 5e-04
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 47 5e-04
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 6e-04
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000... 45 0.001
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 45 0.002
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 44 0.003
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 44 0.003
UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA... 44 0.004
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 43 0.006
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 41 0.031
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 40 0.041
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 40 0.072
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 40 0.072
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 38 0.17
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.38
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 37 0.51
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 36 0.67
UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gamb... 36 0.88
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 36 1.2
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 35 1.5
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 35 1.5
UniRef50_Q36428 Cluster: NADH-ubiquinone oxidoreductase chain 5;... 35 1.5
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 35 2.0
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 34 2.7
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 34 2.7
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q6FVS3 Cluster: Similar to sp|P47114 Saccharomyces cere... 34 3.6
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 33 4.7
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 4.7
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 33 6.2
UniRef50_Q17LG9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.2
UniRef50_A0CNZ4 Cluster: Chromosome undetermined scaffold_226, w... 33 8.2
>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
fly)
Length = 119
Score = 194 bits (472), Expect = 2e-48
Identities = 95/115 (82%), Positives = 102/115 (88%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253
KP+SE+T L++ EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM
Sbjct: 5 KPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 64
Query: 254 VLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
VLENVKEMWTE+PRT VNKD+FISKMFLRGDSVILVLRNPLATAAGK
Sbjct: 65 VLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAGK 119
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 182 bits (443), Expect = 7e-45
Identities = 92/120 (76%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
M+ KP+SEMT L K EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 163 bits (395), Expect = 5e-39
Identities = 81/108 (75%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Frame = +2
Query: 74 KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253
K R +M +K E EEFSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNM
Sbjct: 62 KLRLQMEDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 121
Query: 254 VLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 394
VLENV+EMWTEVP+T VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 122 VLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 169
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 156 bits (378), Expect = 5e-37
Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Frame = +2
Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 295
EE EF+TGPLSVLT SVK NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKE+WTEVP+
Sbjct: 9 EENEFTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPK 68
Query: 296 T-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 394
T VNKD+F+SKMFLRGDSVILVLRNP
Sbjct: 69 TGKGSAKAKPVNKDRFVSKMFLRGDSVILVLRNP 102
>UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotein
chain D2; n=1; Neurospora crassa|Rep: Probable small
nuclear ribonucleoprotein chain D2 - Neurospora crassa
Length = 126
Score = 127 bits (306), Expect = 3e-28
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = +2
Query: 71 TKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCN 250
TKPR+E+T +S +EE EFS GPLS+L +V++++QVLI+ RN +K+L RVKAFDRH N
Sbjct: 13 TKPRNELTEYEVSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMN 72
Query: 251 MVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 358
MVLENVKEMWTE PR VNKD+FISKMF+
Sbjct: 73 MVLENVKEMWTETPRLANGKKGKPVNKDRFISKMFV 108
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 126 bits (305), Expect = 4e-28
Identities = 53/88 (60%), Positives = 73/88 (82%)
Frame = +2
Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 310
S GPLS+LT+ VK NTQ+L+NCRNN+K+LGRVKAFDRHCN++L + +E+WTE ++
Sbjct: 18 SEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKG 77
Query: 311 XXXAVNKDKFISKMFLRGDSVILVLRNP 394
+NKD+FISK+F+RGDSVIL+L++P
Sbjct: 78 SAKYINKDRFISKLFVRGDSVILILKSP 105
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 121 bits (291), Expect = 2e-26
Identities = 57/112 (50%), Positives = 82/112 (73%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
+T + + + +S E+++ +GPLSVL V++N+QVLINCR+N+KLLGRVKAFD
Sbjct: 52 LTDSGNRMPSIGIRSMSTTEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFD 111
Query: 239 RHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 394
RH NM+L +V+EMWTEV + +NKD++IS++FLRGDSV++VL NP
Sbjct: 112 RHFNMILTDVREMWTEV--SGGGGKKKYMNKDRYISRLFLRGDSVVVVLSNP 161
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 118 bits (285), Expect = 1e-25
Identities = 54/108 (50%), Positives = 78/108 (72%)
Frame = +2
Query: 74 KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253
+P+ E++ L ++EE EF GP+S++ ++ T V+I+ RNN K++ RVKAFDRHCNM
Sbjct: 8 RPKHELSRAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNM 67
Query: 254 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 397
VLENVKE+WTE +N+++FISK+FLRGDSVI+VL+ P+
Sbjct: 68 VLENVKELWTE------KKGKNVINRERFISKLFLRGDSVIVVLKTPV 109
>UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 103
Score = 113 bits (273), Expect = 3e-24
Identities = 54/93 (58%), Positives = 70/93 (75%)
Frame = +2
Query: 74 KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253
KPR+E T ++++E E S GPLS+L +V++++QVLI+ R+N+KLL RVKAFDRHCNM
Sbjct: 12 KPRNECTEYEIAQLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNM 71
Query: 254 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 352
+LENVKEMWTE P VNKD+FISKM
Sbjct: 72 ILENVKEMWTETP-VHNGKKGRPVNKDRFISKM 103
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 89.0 bits (211), Expect = 9e-17
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
Frame = +2
Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP- 292
EE GP +LT ++ +NTQ + RNN+K LGRVKAFDRH NM+LEN+ EMW E+
Sbjct: 50 EEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISK 109
Query: 293 ----RTXXXXXXXAVNKDK----FISKMFLRGDSVILVLRN 391
++ N+ K +I KMFLRGDSVI LRN
Sbjct: 110 ETKGKSPCYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRN 150
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 78.2 bits (184), Expect = 2e-13
Identities = 33/82 (40%), Positives = 53/82 (64%)
Frame = +2
Query: 137 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 316
GP +L++ K N++++I+ +N K G ++ FD+HCN++LE+V E+W E
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 317 XAVNKDKFISKMFLRGDSVILV 382
V K+KFI K+F RGD+VIL+
Sbjct: 76 KVVIKEKFIPKLFFRGDAVILI 97
>UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like
protein; n=1; Arabidopsis thaliana|Rep: Small nuclear
ribonucleoprotein-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 135
Score = 75.8 bits (178), Expect = 9e-13
Identities = 38/53 (71%), Positives = 42/53 (79%)
Frame = +2
Query: 71 TKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK 229
+KP E T K EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+
Sbjct: 2 SKPMEEDT--NQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 228 RLSTGIVTWYWRMLRKCGPRYREPAKERRAK-L*TRTNSSPKCS 356
RL TG TW+ +M KCG R+R+P KERR L T +SS +CS
Sbjct: 52 RLLTGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARCS 95
>UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=1; Sus scrofa|Rep: Small nuclear ribonucleoprotein Sm
D2 - Sus scrofa (Pig)
Length = 50
Score = 69.7 bits (163), Expect = 6e-11
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNK 208
M+ KP+SEMT L K EEEEF+TGPLSV TQS K TQVLINCRN K
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +2
Query: 137 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 316
GPLS++ +++ VL++ R+N+K+LGRV A+DRH N+++E+ KE+ T +
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKR 79
Query: 317 XAVNKDKFISKMFLRGDSVILV 382
+ + K+F+RGD+VILV
Sbjct: 80 QGCEFSRKLGKVFIRGDTVILV 101
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 66.9 bits (156), Expect = 4e-10
Identities = 38/112 (33%), Positives = 62/112 (55%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
MT +P M ++ ++ TGP++ + ++V + +LI R+N+KL G +KA D
Sbjct: 1 MTEDPQPEDSMEPSEMTNLQ-----TGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVD 55
Query: 239 RHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 394
RH NM+LE+V E+ P A + I+++FLRGD+VI + NP
Sbjct: 56 RHWNMILEHVIEI---TPTPAKPGQPAAAPIQRRINRLFLRGDNVICIYPNP 104
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 63.7 bits (148), Expect = 4e-09
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
P ++ V+N+ V+I RNNK+++G++ +D+H N++LENV E+
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 320 AVNKDKFISKMFLRGDSVILVL 385
K KFI K+FLRGD+++L+L
Sbjct: 59 IKIKSKFIPKVFLRGDNIVLIL 80
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 63.3 bits (147), Expect = 5e-09
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +2
Query: 137 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 316
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE--------SH 77
Query: 317 XAVNKDKFISKMFLRGDSVILVLRNP 394
+ K + I +FLRG+SVI +++ P
Sbjct: 78 GSEQKQRTIENLFLRGESVIFIVKLP 103
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 50.0 bits (114), Expect = 5e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T V
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ I +F+RGD VILV
Sbjct: 76 YKTAKRTIPMLFVRGDGVILV 96
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 50.0 bits (114), Expect = 5e-05
Identities = 20/68 (29%), Positives = 42/68 (61%)
Frame = +2
Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 358
++ + C+ +++L+G++ A+D H NM+L NV+E + + + ++ + +F+
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERN--LDMVFV 61
Query: 359 RGDSVILV 382
RGDS+ILV
Sbjct: 62 RGDSIILV 69
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 49.2 bits (112), Expect = 9e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1;
Babesia bovis|Rep: LSM domain containing protein -
Babesia bovis
Length = 89
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/84 (28%), Positives = 45/84 (53%)
Frame = +2
Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 310
S P+ V+ V + +V + C+ ++++G++ A+D HCNM+L + E +T V
Sbjct: 2 SKEPMDVIR--VNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTN 59
Query: 311 XXXAVNKDKFISKMFLRGDSVILV 382
K +F+RGD++IL+
Sbjct: 60 QEVTTITSKDSGVVFVRGDALILL 83
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 46.8 bits (106), Expect = 5e-04
Identities = 26/115 (22%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Frame = +2
Query: 62 TSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK---- 229
T+T + ++ + K +F+ GPLS+L +++++ +++ + R + G +
Sbjct: 140 TTTIRKKNTNEDHKILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYII 199
Query: 230 AFDRHCNMVLENVKE---MWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVL 385
AFD+H N++L +V+E + +P T ++ ++F++GD+V+ V+
Sbjct: 200 AFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 46.8 bits (106), Expect = 5e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 182 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 289
+ + C+N ++L+GR++AFD HCNMVL V E T V
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTV 57
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNK-DKFISKMF 355
+V + C+ ++++ G++ A+D H NM+L N E + + + +V K ++ + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQ---SVVENDEESVKKIERNLDMVF 77
Query: 356 LRGDSVILV 382
+RGDS+ILV
Sbjct: 78 VRGDSIILV 86
>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000018479 - Nasonia
vitripennis
Length = 225
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +2
Query: 137 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 283
GPL VL Q ++N +V + RN + G V+A FDRH N+ LE+ E+WT
Sbjct: 114 GPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWT 166
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/93 (29%), Positives = 49/93 (52%)
Frame = +2
Query: 104 LSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 283
+S + E+ PL ++ + + VL+ R +++ G+++ +D HCNM+L + E
Sbjct: 1 MSTVRTEQQQQEPLDLVRYQL--DELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIY 58
Query: 284 EVPRTXXXXXXXAVNKDKFISKMFLRGDSVILV 382
+VP V K+ +F+RGDSVIL+
Sbjct: 59 DVPE-----GQEPVTKN--TDMVFVRGDSVILI 84
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +2
Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 358
++ + RN+++L GR+ +D+H NM+L +V+E T + + + I FL
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFL 86
Query: 359 RGDSVILV 382
RGD + LV
Sbjct: 87 RGDGIFLV 94
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ +S+ + QVL+ N+K+ G + FD + NMVLENV+E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEFDNEGP--------- 71
Query: 320 AVNKDKFISKMFLRGDSVILVL 385
K K I KM L G V +++
Sbjct: 72 ---KGKVIKKMLLNGSQVAMLI 90
>UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG12924-PA - Apis mellifera
Length = 118
Score = 43.6 bits (98), Expect = 0.004
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +2
Query: 137 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 283
GPL +L + ++N T++ + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 6 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWT 58
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +2
Query: 182 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 361
V + R +++L GR+ A+D H NMVL + +E+ T K +F+R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 362 GDSVILV 382
GDSVIL+
Sbjct: 82 GDSVILI 88
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +2
Query: 113 IEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
+EE+E + PL ++ + + V++ R +++L GR+ A+D HCN+VL +V+E
Sbjct: 1 MEEKEETNEPLDLVRLCI--DEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEE 52
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 40.7 bits (91), Expect = 0.031
Identities = 24/89 (26%), Positives = 40/89 (44%)
Frame = +2
Query: 125 EFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXX 304
+ S P + + + VL+ R+ + + G +KA+DRH N+V E W E
Sbjct: 45 KISDSPYAFFDEVLALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE------ 98
Query: 305 XXXXXAVNKDKFISKMFLRGDSVILVLRN 391
+ + LRGD+VI+V+ N
Sbjct: 99 ----NGIEYTEERKNFMLRGDNVIMVVSN 123
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 40.3 bits (90), Expect = 0.041
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 143 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 322
+S L + K+ VL+ RNNK + G +K FD H N+ LEN +++ E P
Sbjct: 8 ISTLMTNSKDKV-VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP-------- 58
Query: 323 VNKDKFISKMFLRGDSVILV 382
I K+ LRGD+++ +
Sbjct: 59 ------IGKVLLRGDNILAI 72
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 39.5 bits (88), Expect = 0.072
Identities = 28/91 (30%), Positives = 46/91 (50%)
Frame = +2
Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 295
E EFS PL +L S+++ VL+ +NN + G + +FD H N++L N +E +
Sbjct: 46 EYTEFSN-PLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEETGHSL-- 100
Query: 296 TXXXXXXXAVNKDKFISKMFLRGDSVILVLR 388
++F + +RGDS+I V R
Sbjct: 101 ------------NRFFPLLVIRGDSIIFVTR 119
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 39.5 bits (88), Expect = 0.072
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 271
PL L +S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK 48
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 38.3 bits (85), Expect = 0.17
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL VL S+ Q+ I RNN +L G + ++D H NM++ +E
Sbjct: 7 PLDVLKFSIAQ--QIYIKMRNNIELKGTLVSYDNHLNMIISKAEE----------TSFQE 54
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + + ++LRGD +IL+
Sbjct: 55 GIKTKRKLDALYLRGDGIILI 75
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 37.1 bits (82), Expect = 0.38
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL +L ++ + +V I R + L+G ++AFD HCN+VL + E ++
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS---- 57
Query: 320 AVNKDKFISKMFLRGDSVILV 382
++ +F+RGD+V L+
Sbjct: 58 --ESERRCEMVFIRGDTVTLI 76
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 36.7 bits (81), Expect = 0.51
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 173 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 352
N ++ + ++ ++L+G+ AFDRH N+VL + +E P + + + +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73
Query: 353 FLRGDSVI 376
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 36.3 bits (80), Expect = 0.67
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 182 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000018479 - Anopheles gambiae
str. PEST
Length = 257
Score = 35.9 bits (79), Expect = 0.88
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 113 IEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMW 280
I E+ GPL L + ++ +V ++ R K + G V FD+H N+ L +V E W
Sbjct: 115 IRLEKGFEGPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETW 174
Query: 281 T 283
T
Sbjct: 175 T 175
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 35.5 bits (78), Expect = 1.2
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
P+ +L Q V N VLI+ + +++ G ++ +D H N+VL+ +E+
Sbjct: 10 PMDILDQ-VLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEI-------------- 54
Query: 320 AVNKDKFISKMFLRGDSVILVLRNP 394
+ + I + +RGD+VI + NP
Sbjct: 55 VQGQAQSIGTLIIRGDNVIYISPNP 79
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 358
+VLI R ++ + G + A+D H N+V+ +E V T + + +F+
Sbjct: 23 RVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLFV 82
Query: 359 RGDSVILV 382
RGD VIL+
Sbjct: 83 RGDGVILL 90
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 35.1 bits (77), Expect = 1.5
Identities = 24/84 (28%), Positives = 45/84 (53%)
Frame = +2
Query: 143 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 322
+ VL +S+ N VLI + NK + G + FD+H N++L++ + E+P A
Sbjct: 7 VKVLDESI--NQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSE----EIP---------A 51
Query: 323 VNKDKFISKMFLRGDSVILVLRNP 394
+ K + + +RGD+V+++ P
Sbjct: 52 EGEAKGLGSIVVRGDNVVMISPPP 75
>UniRef50_Q36428 Cluster: NADH-ubiquinone oxidoreductase chain 5;
n=552; Mandibulata|Rep: NADH-ubiquinone oxidoreductase
chain 5 - Locusta migratoria (Migratory locust)
Length = 572
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 635 LIVFSFILQYVNLIQFQYIK-ISSLFIYYI*LQNHRTNTVSNFVKVLLQF 489
++V +FI+ +++L+ ++ ISSL IYY H ++ F+ ++L F
Sbjct: 43 MVVMTFIIDWMSLVFMSFVMYISSLVIYYSNDYMHNEKNINRFIMIVLMF 92
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 34.7 bits (76), Expect = 2.0
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 277
PL L S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 34.3 bits (75), Expect = 2.7
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 277
PL V+ +SV +VL+ +K+ G++ FD + NMVLE+V E+
Sbjct: 54 PLEVIDRSVGKRVRVLMT--GDKEFNGKLIGFDDYVNMVLEDVTEV 97
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 34.3 bits (75), Expect = 2.7
Identities = 12/33 (36%), Positives = 26/33 (78%)
Frame = +2
Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 277
QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 33.9 bits (74), Expect = 3.6
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 310
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 311 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 409
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>UniRef50_Q6FVS3 Cluster: Similar to sp|P47114 Saccharomyces
cerevisiae YJR054w; n=1; Candida glabrata|Rep: Similar
to sp|P47114 Saccharomyces cerevisiae YJR054w - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 524
Score = 33.9 bits (74), Expect = 3.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 632 IVFSFILQYVNLIQFQYIKISSLFIYYI*LQNHRTNTVSNFVKVLLQFK 486
++FSF+L + +F +SS+F+YY ++ HR ++ FV + + K
Sbjct: 218 MLFSFVLWAFFMFKFCLALLSSIFVYYNLIRRHRYGSLKAFVCITIDKK 266
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 33.5 bits (73), Expect = 4.7
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
PL+++ + + +++ I + +K+++G++ FD + NMVLE+V E
Sbjct: 12 PLALMDKCI--GSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 33.5 bits (73), Expect = 4.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 176 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 280
+Q+ + K+ G++ FD + NMVLE V E+W
Sbjct: 27 SQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIW 61
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 33.1 bits (72), Expect = 6.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 277
P+ VL ++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEI 53
>UniRef50_Q17LG9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 283
Score = 32.7 bits (71), Expect = 8.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 56 KMTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRV--- 226
+M KP + + L K+E E GPL ++ ++ +V + R + G V
Sbjct: 128 EMIKAEKP-ARLRRNILVKLERTE---GPLKLMMTWMRERVRVRVYTRRKSGVRGYVTGF 183
Query: 227 -KAFDRHCNMVLENVKEMW 280
+ FD+H NM L +V E W
Sbjct: 184 VEMFDKHWNMALVDVYESW 202
>UniRef50_A0CNZ4 Cluster: Chromosome undetermined scaffold_226,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_226,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 138
Score = 32.7 bits (71), Expect = 8.2
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 608 YVNLIQFQYIKISSLFIYYI*LQNHRTNTVSNFVKVLLQFK-E*TSKAIHFLNI 450
Y N I+ I +S LF Y L N + F+K+++QF+ + T+K +F NI
Sbjct: 70 YNNYIKILLIYVSFLFALYSYLSNQLLSYFMFFIKLIVQFRNQFTTKFYYFYNI 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,260,432
Number of Sequences: 1657284
Number of extensions: 11617490
Number of successful extensions: 24840
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 24048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24811
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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