Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0182
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...   160   2e-40
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    43   3e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    29   0.61 
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   3.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.3  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    26   4.3  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   9.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.9  

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score =  160 bits (388), Expect = 2e-40
 Identities = 77/109 (70%), Positives = 88/109 (80%)
 Frame = +2

Query: 74  KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253
           KPRSE++   L+++EE EFS GPLSVL Q+VKN+ QVLINCRNNKKLL RVKAFDRH NM
Sbjct: 7   KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66

Query: 254 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLA 400
           VLENVKEMWTE  RT       A+NKD+FISKMFLRGD V+LV+R P A
Sbjct: 67  VLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +2

Query: 182 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 361
           V +  R +++L GR+ A+D H NMVL + +E+ T                 K    +F+R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 362 GDSVILV 382
           GDSVIL+
Sbjct: 82  GDSVILI 88


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +2

Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLE 262
           +V++  R+ KKL+G +++FD+  N++L+
Sbjct: 23  KVIVVLRDGKKLIGILRSFDQFANLMLQ 50


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 146 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
           S+L  S   + ++       +++ G +K FD+  N+VL++V+E
Sbjct: 24  SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 426 LLHYFPAAVARGFLSTKITESPRRNILEMNLSLFTALPFFPLP 298
           L  Y PA  A  F +  + +      L   + +F+ L F PLP
Sbjct: 434 LFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLP 476


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 53  YKMTSTTKPRSEMTLXXLSKIEEEEFST--GPLSVLTQSVKNNTQVL 187
           +++ S   PRSE++   L K+ +  +ST   P +   +S+KN   VL
Sbjct: 60  FEVMSLYIPRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVL 106


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 59  MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVL-INCRNNKKLLGRVKAF 235
           M S  + R+ +       IEE+E     L     S+K   +   I+    +K++   +  
Sbjct: 322 MKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQL 381

Query: 236 DRHCNMVLENVKEMWTEV 289
           DR+ NM+   + E+  EV
Sbjct: 382 DRNLNMIGSKISELRKEV 399


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKL 214
           E   F+ GP  + + + KNN+ +    +NN  L
Sbjct: 103 EAMNFNEGPTGISSIASKNNSSITSKLQNNSNL 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,149
Number of Sequences: 5004
Number of extensions: 52984
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)