BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0182 (669 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 160 2e-40 SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 43 3e-05 SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 29 0.61 SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 27 3.2 SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 4.3 SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 26 4.3 SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 9.9 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.9 >SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharomyces pombe|chr 1|||Manual Length = 115 Score = 160 bits (388), Expect = 2e-40 Identities = 77/109 (70%), Positives = 88/109 (80%) Frame = +2 Query: 74 KPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 253 KPRSE++ L+++EE EFS GPLSVL Q+VKN+ QVLINCRNNKKLL RVKAFDRH NM Sbjct: 7 KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66 Query: 254 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLA 400 VLENVKEMWTE RT A+NKD+FISKMFLRGD V+LV+R P A Sbjct: 67 VLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115 >SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccharomyces pombe|chr 2|||Manual Length = 93 Score = 43.2 bits (97), Expect = 3e-05 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = +2 Query: 182 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 361 V + R +++L GR+ A+D H NMVL + +E+ T K +F+R Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81 Query: 362 GDSVILV 382 GDSVIL+ Sbjct: 82 GDSVILI 88 >SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 140 Score = 29.1 bits (62), Expect = 0.61 Identities = 10/28 (35%), Positives = 22/28 (78%) Frame = +2 Query: 179 QVLINCRNNKKLLGRVKAFDRHCNMVLE 262 +V++ R+ KKL+G +++FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50 >SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosaccharomyces pombe|chr 3|||Manual Length = 113 Score = 26.6 bits (56), Expect = 3.2 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +2 Query: 146 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274 S+L S + ++ +++ G +K FD+ N+VL++V+E Sbjct: 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66 >SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|||Manual Length = 822 Score = 26.2 bits (55), Expect = 4.3 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = -1 Query: 426 LLHYFPAAVARGFLSTKITESPRRNILEMNLSLFTALPFFPLP 298 L Y PA A F + + + L + +F+ L F PLP Sbjct: 434 LFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLP 476 >SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 514 Score = 26.2 bits (55), Expect = 4.3 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +2 Query: 53 YKMTSTTKPRSEMTLXXLSKIEEEEFST--GPLSVLTQSVKNNTQVL 187 +++ S PRSE++ L K+ + +ST P + +S+KN VL Sbjct: 60 FEVMSLYIPRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVL 106 >SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|Schizosaccharomyces pombe|chr 2|||Manual Length = 624 Score = 25.0 bits (52), Expect = 9.9 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = +2 Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVL-INCRNNKKLLGRVKAF 235 M S + R+ + IEE+E L S+K + I+ +K++ + Sbjct: 322 MKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQL 381 Query: 236 DRHCNMVLENVKEMWTEV 289 DR+ NM+ + E+ EV Sbjct: 382 DRNLNMIGSKISELRKEV 399 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/33 (30%), Positives = 17/33 (51%) Frame = +2 Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKL 214 E F+ GP + + + KNN+ + +NN L Sbjct: 103 EAMNFNEGPTGISSIASKNNSSITSKLQNNSNL 135 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,617,149 Number of Sequences: 5004 Number of extensions: 52984 Number of successful extensions: 111 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 110 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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