Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0182
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 163 9e-41
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 119 2e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 51 7e-07
07_01_0479 + 3606663-3607448 37 0.017
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 34 0.12
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 29 3.3
12_01_0349 + 2677347-2677424,2677548-2677631,2677717-2677821,267... 28 5.9
04_04_0597 + 26502819-26502853,26503030-26503171,26503929-265041... 28 5.9
08_01_0975 + 9819387-9821512,9821768-9821910,9822185-9822349,982... 28 7.7
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 163 bits (397), Expect = 9e-41
Identities = 79/96 (82%), Positives = 84/96 (87%), Gaps = 1/96 (1%)
Frame = +2
Query: 110 KIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 289
K EEEEFSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 10 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 69
Query: 290 PRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNP 394
P+T VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 70 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 105
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 119 bits (286), Expect = 2e-27
Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = +2
Query: 161 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 337
S + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436
Query: 338 FISKMFLRGDSVILVLRNP 394
FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +2
Query: 116 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 295
EEE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 11 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 68
Query: 296 TXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATA 406
+ I +F+RGD VILV PL TA
Sbjct: 69 DDETYEEIVRTTKRTIPFLFVRGDGVILV-SPPLRTA 104
>07_01_0479 + 3606663-3607448
Length = 261
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +2
Query: 173 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 352
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72
Query: 353 FLRGDSVI 376
LRG+ V+
Sbjct: 73 LLRGEEVV 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 310
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 311 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 409
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 176 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
+++ + + +K+L+G + FD + NMVLE+V E
Sbjct: 90 SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>12_01_0349 +
2677347-2677424,2677548-2677631,2677717-2677821,
2678217-2678363,2678987-2679244,2679337-2679468,
2679550-2679570
Length = 274
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 104 LSKIEEEEFSTGPLSVLTQSVKNNTQVL 187
+SK+E++E ST PL V Q + + T+ L
Sbjct: 196 VSKVEDQEVSTAPLRVQEQLLDDETRAL 223
>04_04_0597 +
26502819-26502853,26503030-26503171,26503929-26504186,
26504276-26504407,26504834-26504980
Length = 237
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 104 LSKIEEEEFSTGPLSVLTQSVKNNTQVL 187
+SK+E++E ST PL V Q + + T+ L
Sbjct: 117 VSKVEDQEVSTAPLRVQEQLLDDETRAL 144
>08_01_0975 +
9819387-9821512,9821768-9821910,9822185-9822349,
9822382-9822419
Length = 823
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 282 VHISLTFSNTMLQCRSKAFTLPKS 211
+H L F TMLQC F PKS
Sbjct: 563 LHTFLVFDTTMLQCSWSCFVPPKS 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,445
Number of Sequences: 37544
Number of extensions: 294292
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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