Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0182
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                  169   2e-42
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   40   0.001
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              34   0.091
SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4)                     30   2.0  
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   28   7.9  

>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score =  169 bits (410), Expect = 2e-42
 Identities = 82/107 (76%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
 Frame = +2

Query: 89  MTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 268
           MT   L++ E+EEF+TGPLSVLTQSVKNNTQVLINCRNN+KLL RVKAFDRHCNMVLENV
Sbjct: 1   MTPEELAQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENV 60

Query: 269 KEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATA 406
           KEMWTE P++         VNKD++I+KMFLRGDSVILVLRNPLATA
Sbjct: 61  KEMWTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNPLATA 107


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/50 (36%), Positives = 34/50 (68%)
 Frame = +2

Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 289
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T V
Sbjct: 16  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTV 63


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +2

Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 283
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 3   SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 57


>SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +2

Query: 131 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 283
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 148 SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 202


>SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4)
          Length = 243

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 252 WYWRMLRKCGPRYREPAKERRAKL 323
           W+WR L KC P+ +   K +  K+
Sbjct: 80  WWWRRLEKCKPKKKRKRKHKHTKV 103


>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 280 DRGTENRQRKEGQSCKQGQIHLQNVPPR*FCDLSTKESS 396
           ++ TEN Q +   SC++ ++H  N P +  CD   K+ S
Sbjct: 883 EQATENTQEQATDSCQEWRVH--NDPRKKVCDYFVKDLS 919


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 104 LSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 283
           +SK++   F+ G +   T+ V    Q   N  N K+   R++ +D  C  + E++  MW 
Sbjct: 308 ISKVKHV-FAKGYIPNWTEEVFTVGQ-RYNNTNQKRYAYRLREYDGTCFTLHEHIVWMWV 365

Query: 284 EVPR 295
            VP+
Sbjct: 366 RVPK 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,919
Number of Sequences: 59808
Number of extensions: 382153
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)