Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0182
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 182 1e-45
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 182 1e-45
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 182 1e-45
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 182 1e-45
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 49 1e-05
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 49 1e-05
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 49 1e-05
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 49 1e-05
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 49 1e-05
BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for MG... 43 9e-04
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 182 bits (443), Expect = 1e-45
Identities = 92/120 (76%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
M+ KP+SEMT L K EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 182 bits (443), Expect = 1e-45
Identities = 92/120 (76%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
M+ KP+SEMT L K EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 182 bits (443), Expect = 1e-45
Identities = 92/120 (76%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
M+ KP+SEMT L K EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 182 bits (443), Expect = 1e-45
Identities = 92/120 (76%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Frame = +2
Query: 59 MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
M+ KP+SEMT L K EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 415
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL AGK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +2
Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 320 AVNKDKFISKMFLRGDSVILV 382
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for
MGC:26736) protein.
Length = 55
Score = 43.2 bits (97), Expect = 9e-04
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 251 MVLENVKEMWTEVPR----TXXXXXXXAVNKDKFISKMFLRGDSVI 376
MVLENVKEM TEVP+ NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,902,485
Number of Sequences: 237096
Number of extensions: 1762571
Number of successful extensions: 2893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2883
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -