Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0182
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...   176   1e-44
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    53   2e-07
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    31   0.74 
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    27   9.1  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score =  176 bits (429), Expect = 1e-44
 Identities = 86/117 (73%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
 Frame = +2

Query: 59  MTSTTKPRSEMTLXXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 238
           M++  KPRSEMT   L+  E+EEF+ GPLS+LT SVKNN QVLINCRNNKKLLGRVKAFD
Sbjct: 1   MSAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFD 60

Query: 239 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATA 406
           RHCNMVLENVKEMWTEVP+T        +V KD+FISKMFLRGDSVILV++NPLA A
Sbjct: 61  RHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLAQA 117


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 46/81 (56%)
 Frame = +2

Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 319
           PL +L  S+  + +V +  RN+++L GR++AFD+H NMVL  V+E  T            
Sbjct: 17  PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEI 74

Query: 320 AVNKDKFISKMFLRGDSVILV 382
                + +  +F+RGDSVILV
Sbjct: 75  YKQTKRVVPMLFVRGDSVILV 95


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/45 (33%), Positives = 30/45 (66%)
 Frame = +2

Query: 140 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
           PL ++ + + +   V++  +N+K+++G +  FD + NMVLE+V E
Sbjct: 14  PLELIDKCIGSKIWVIM--KNDKEIVGTLTGFDDYVNMVLEDVVE 56


>Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical
           protein F25D7.2 protein.
          Length = 361

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 635 LIVFSFILQYVNLIQFQYIKISSLFIYYI*L-QNHRTNTV 519
           +++FS IL Y +  +F  +  S+LFIY+I L +NH  N V
Sbjct: 235 VLLFSAILLYSSFERFALVLCSALFIYFIQLRRNHARNRV 274


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/51 (29%), Positives = 32/51 (62%)
 Frame = +2

Query: 122 EEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 274
           + +  G +S+  Q  K   ++L+  R+ +KL+G +++ D+  N++LE+V E
Sbjct: 5   DPYLPGAISLFEQLDK---KLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 243 CRSKAFTLPKSFLLLRQFIRTCVLFFTDCVS 151
           CR KA+ +  S LLLR +I   V    +C++
Sbjct: 636 CRKKAYAMSHSNLLLRNYILESVKSMEECIN 666


>AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical
           protein F22F7.4 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 540 LQLYVINKQTRYFNILKLYQ 599
           LQLYV++    YFN+LK Y+
Sbjct: 198 LQLYVVSMVESYFNLLKEYE 217


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 635 LIVFSFILQYVNLIQFQYIKISSLFIY-YI*LQNHRTNTVSN 513
           L+VF F   Y N++ + Y+ ++ +F Y ++   N   +T++N
Sbjct: 5   LLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 520 FPIL*KYYYSLRNEPVKLFIS*IFYSLILKLITALLPC 407
           +PIL K  +S +   + +FIS IF + +L +   + PC
Sbjct: 107 YPILYKNVFSSKWTKLVIFISFIFSTTVLTIFFQIYPC 144


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 271 LNILQYHVTMPVESLHSTQEFLIVTAIYQNLCVV 170
           L + Q+ +   +ES+   QE +I   IY+N C++
Sbjct: 535 LRLHQFTLFRTIESMTREQEEIIFANIYKNYCII 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,965
Number of Sequences: 27780
Number of extensions: 291840
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)