Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0182
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 313 LLSFAGSRYLGPHFLNILQYHVTMPVESLH 224
           LLS  G +Y+ P     L+ H T  V +LH
Sbjct: 306 LLSVLGYKYITPLIQKHLKIHDTCGVHNLH 335


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 515 WKLCWFYDSATIC 553
           WK+CW   +  IC
Sbjct: 491 WKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 515 WKLCWFYDSATIC 553
           WK+CW   +  IC
Sbjct: 544 WKICWTITTPAIC 556


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 354 NILEMNLSLFTALPFFPLPVLGTSVHIS 271
           + LEM + +F   P +P P++     IS
Sbjct: 60  HFLEMGVDMFWLSPIYPSPMVDFGYDIS 87


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 354 NILEMNLSLFTALPFFPLPVLGTSVHIS 271
           + LEM + +F   P +P P++     IS
Sbjct: 60  HFLEMGVDMFWLSPIYPSPMVDFGYDIS 87


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 298 GSRYLGPHFLNILQYHVTMPVESLHSTQEFLIVTAIYQNLCVVL 167
           GS  +G    NIL       V  L     +L+V+    +LCV L
Sbjct: 49  GSIIVGTVIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVAL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,054
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)