Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0180
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.42 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.0  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 22/95 (23%), Positives = 38/95 (40%)
 Frame = +2

Query: 302 LRHFARLQSKDDQGGIRTNTTVCLGKIAAHLHPQIRQKVLVSAFVRSTRDPFPPARQAGV 481
           LR   R   +DD   +R      LG++A  +  +  +  L+  F+  T+D     R   V
Sbjct: 168 LRSHFRALCQDDTPMVRRAAATKLGELAQVVELEYLKTDLIPMFLSLTQDEQDSVRLLAV 227

Query: 482 LALAATQQYFLLSEVANRXLPALCPLTIDP*KQVR 586
            A  +    F   ++    +P +   T D   +VR
Sbjct: 228 EACVSFASLFQQEDIEMFVMPTVRNCTGDTSWRVR 262


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 41   QDPDYQKQIVPCVVKLFASND 103
            Q+P    ++VPC  +LF ++D
Sbjct: 2226 QEPVLPAEVVPCQGRLFVADD 2246


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 486 ARTPACRAGGKGSLVERTNAD 424
           +RTP  +  G+G +VER  +D
Sbjct: 212 SRTPRPKHDGRGRIVERFTSD 232


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 474 PESWRWPPRNSTSCYQKWPTXS 539
           P+  +W P  STS  Q+  T S
Sbjct: 431 PKPGQWVPEKSTSTTQRTTTVS 452


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 430 RRHKHLLPYLRMQVRRYLTEADCCVRSYSSL 338
           +R  + LP   + +     + DCC+R   SL
Sbjct: 535 KRENYTLPASAVGIAWLYVDNDCCIRYDVSL 565


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  LLNYSPLMTERQDQGFCNN*TSSLCIC 158
           +  + P+ + ++ Q  C N + + CIC
Sbjct: 24  IFGFLPVCSSQKGQKTCLNLSINYCIC 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,445
Number of Sequences: 336
Number of extensions: 2853
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)