Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0180
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 98 9e-22
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 30 0.26
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 29 0.60
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 29 0.60
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 2.4
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 2.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.2
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.2
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 27 3.2
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 27 3.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 4.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.6
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 26 5.6
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 5.6
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 25 9.7
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 98.3 bits (234), Expect = 9e-22
Identities = 60/183 (32%), Positives = 91/183 (49%)
Frame = +2
Query: 47 PDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNAI 226
PD +K ++ L R LL + L + D F N +
Sbjct: 336 PDIEKDFGVPLLSLLKQQSVPIRGLLLSGIINNPDVLPKNIYEDTSFSVFANLVRSNSPT 395
Query: 227 IREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGKIAAHLHPQI 406
++E + +A KL+ LN E+LR A +Q+ D +RTN+T+CLGKIA +L +
Sbjct: 396 LKEHAIVVFSIIAPKLSKKTLNNELLRSLAVVQN-DQHPTLRTNSTICLGKIAEYLDASV 454
Query: 407 RQKVLVSAFVRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPALCPLTIDP*KQVR 586
R+ VL +A RS +DPF PAR+A + L + Q YF +VA + P++ PL ID + +R
Sbjct: 455 RKPVLAAALSRSLKDPFVPAREAALKVLLSVQNYFDTKDVAIKLFPSVVPLLIDENEGIR 514
Query: 587 DAA 595
A
Sbjct: 515 RTA 517
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 20 LSXANYXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQ 181
LS NY D ++ P VV L + R DQF+ ++N + ++
Sbjct: 483 LSVQNYFDTKDVAIKLFPSVVPLLIDENEGIRRTAEDVTDQFLSRIKNFNLGEK 536
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 95 SNDRTT--RSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNAIIREQTVKSIVHLAS 268
SND++ R +L L +IM + + QI+ +++G D + I+R++ +K + +
Sbjct: 823 SNDQSAIVRDTVLDLLGTYIMAYRETI--PQIYGCIISGISDPSTIVRKRAIKQLCEVYE 880
Query: 269 KLNYNNLNVEV 301
N+ V++
Sbjct: 881 ATEDLNIRVDI 891
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 29.1 bits (62), Expect = 0.60
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 221 AIIREQTVKSIV-HLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGKIAAHLH 397
A+ E T S+ H+ +L+ NL L + + D+G V LG+ +AHLH
Sbjct: 20 AVHGETTSNSVTFHVFQQLDSTNLTNYQLENVITQVKELDKGPKDYLYWVILGRCSAHLH 79
Query: 398 PQIRQKVLVSAFVRS 442
++ ++L A + S
Sbjct: 80 VKMLDQLLEEAMIMS 94
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 300 TSTFRLL*FSLEAR*TIDFTVCSLIIAFVSKKPFTTCGKIWSLTVEFCRCIMN-WSSCCR 124
TS R++ L D VC++ + ++ C +W L + R I+N + SC
Sbjct: 523 TSAARIILVKLNENIPEDGDVCNIYLEIITNA-LDVCANVWPLASQASRAILNAYKSCAT 581
Query: 123 S 121
S
Sbjct: 582 S 582
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.1 bits (57), Expect = 2.4
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 332 DDQGGIRTNTTVCLGKIAAHLHPQIRQKVLVSAFV-RSTRDPFPPARQAGVLALAATQQ- 505
+D I CL A + I VL AFV ++ ++P R+A V+A + +
Sbjct: 339 EDDWNISMAAATCLQLFAQVVGDLIVNPVL--AFVEQNIQNPDWHQREAAVMAFGSVLEG 396
Query: 506 --YFLLSEVANRXLPALCPLTIDP*KQVRD 589
+L+ + N+ LP L + +DP V+D
Sbjct: 397 PNVAMLTPLVNQALPVLINMMVDPVIFVKD 426
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 477 PACRAGGKGSLVERTNADTSTFCRICGCRCAAILPRQTVVFVLIPP*S-SLDCNLAKCRN 301
P+C++ + L+ R + + R+ GC AI+ + L+ S SL+ ++C
Sbjct: 599 PSCKSSSQRHLIIRNSWARNLLLRLTGCSSEAIVENFKQLRCLLQENSDSLELLNSQCMA 658
Query: 300 TSTFRLL*FSLEAR*TIDF 244
+ +++ F L T++F
Sbjct: 659 DLSVQVVDFELSKLQTVEF 677
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 419 LVSAFVRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPAL 550
L+S+F+ + + P + +TQ+Y +LSE+ L L
Sbjct: 437 LLSSFINNNTNRLTPNTVVNSVEFQSTQRYLVLSEIGETDLDIL 480
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 223 SICVQEAIYNLRENLVINCRILQMHNELV*LLQ 125
S+ V+ AI LRE + + Q NELV +LQ
Sbjct: 458 SVMVENAISKLREKVEQEVAVTQRANELVGMLQ 490
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 65 IVPCVVKL--FASNDRTTRSR-LLQQLDQFIMHLQNSTVNDQIFPQVV 199
I PC V L FA+ + + R ++ D FI+ +STVND + ++
Sbjct: 25 ITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGSSTVNDSLMELLI 72
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 53 YQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIF--PQVVNGFLD 214
+QK ++ VVK+F+++ R + Q+ + ++ + V+D+IF P VN + D
Sbjct: 359 FQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKRFVSDKIFKKPITVNEWWD 414
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 47 PDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQ 160
PD K+ +PC V +F LQ ++ F+ H++
Sbjct: 3 PDISKKRLPCKVLVFNLPPTLPEQVFLQSINSFLPHVE 40
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 182 IFPQVVNGFLDTNAIIREQTVKSIVHLASKLNYNNLNVEVLRHFARL 322
IFP ++NG D + +R+ + ++ +A + + EV +H A+L
Sbjct: 384 IFPIIINGLCDNDMDVRQAALLALSQIAVE-----IPTEVSKHHAQL 425
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 47 PDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIF 187
PD ++VP V+ L S + + + L LD+ + S V +Q F
Sbjct: 123 PDEWPEVVPAVLHLLQSTNENSINASLDVLDELV---DESLVEEQFF 166
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 5.6
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = -2
Query: 295 NVQIVVI*FRSEMNNRFHS----LFPNNSICVQEAIYNLRENLV--IN-CRILQMHNELV 137
NV ++ F E+ NR LFPNNS NL N+V IN +IL+ ++ V
Sbjct: 118 NVLPILQRFNPELFNRSSDNETPLFPNNSPPASTTALNLSSNIVPSINESKILEQEDDDV 177
Query: 136 *LLQKP*SCRSVIR 95
P + +S+IR
Sbjct: 178 SNKSLPHAQQSIIR 191
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 44 DPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNST-VNDQIFPQVVNGFLDTN 220
D + KQI P +VK +T L +++ I L+N T ++ + F +V +
Sbjct: 45 DSNIYKQIGPTLVKQSHEEAKTNVKTRLDFINKEIARLENQTKISQEEFSKVKGAIIQAQ 104
Query: 221 A 223
A
Sbjct: 105 A 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,007
Number of Sequences: 5004
Number of extensions: 48532
Number of successful extensions: 128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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