Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0180
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 150 1e-36
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 36 0.029
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 34 0.12
10_08_0119 - 14952786-14953931,14954709-14954831 32 0.35
10_08_0124 + 14992399-14993478 31 0.82
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 0.82
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 30 1.9
03_05_0185 + 21713500-21714291 30 1.9
09_04_0462 + 17788869-17789031,17789284-17789579 29 4.4
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 4.4
06_01_0810 + 6111962-6112507 28 5.8
05_01_0110 - 741968-742279 28 5.8
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 7.6
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 28 7.6
05_01_0200 - 1437807-1437971,1438615-1438736,1438933-1439224 28 7.6
02_05_0692 + 30973171-30973908 28 7.6
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052 28 7.6
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 150 bits (363), Expect = 1e-36
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Frame = +2
Query: 20 LSXANYXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVV 199
L ++ + +++P +VKLFASNDR R LLQ +DQF L TV++Q+FP V
Sbjct: 351 LKMGSWLPADQFSAKVLPTIVKLFASNDRAIRVSLLQHIDQFGESLTAQTVDEQVFPHVA 410
Query: 200 NGFLDTNAIIREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGK 379
GF DT+A +RE T+KS++ LA K+ D++ IRTNTT+ LG
Sbjct: 411 TGFSDTSAFLRELTLKSMLVLAPKV-------------------DEEPAIRTNTTILLGN 451
Query: 380 IAAHLHPQIRQKVLVSAF-VRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPALCP 556
IA +++ R++VL++AF VR+ RD FPPAR AG++AL+ T Y+ ++E+A R LP +
Sbjct: 452 IANYMNDGTRKRVLINAFTVRALRDTFPPARAAGIMALSVTSSYYEMTEIATRILPNVVV 511
Query: 557 LTIDP*KQVRDAAFKTIRGF 616
LT DP VR AF+ F
Sbjct: 512 LTFDPDSDVRTKAFQATDQF 531
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -1
Query: 548 EPARXCWPLLIARSTVAWRPAPGLRLVAPVGRDPSWSERTQTQAPSAVSADAGAPLS 378
E R C +L R WR APGLR+V GR P+ E Q + G+PL+
Sbjct: 38 EAVRTC--VLARRWRHLWRSAPGLRIVRAAGRPPATVEEPQGFVDHLLLLRGGSPLN 92
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 33.9 bits (74), Expect = 0.12
Identities = 38/197 (19%), Positives = 70/197 (35%)
Frame = +2
Query: 17 CLSXANYXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQV 196
C + + D I+P +V R + QL + + +Q+ P
Sbjct: 226 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAY 285
Query: 197 VNGFLDTNAIIREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLG 376
V D A +R + L+ L ++ + + S D +R+ +
Sbjct: 286 VRLLRDNEAEVRIAAAGKVTKFCRILS-PQLAIQHILPCVKELSSDSSQHVRSALASVIM 344
Query: 377 KIAAHLHPQIRQKVLVSAFVRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPALCP 556
+A L + + L+ F+ +D FP R + L Q + ++ LPA+
Sbjct: 345 GMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404
Query: 557 LTIDP*KQVRDAAFKTI 607
L D +VR A + I
Sbjct: 405 LAEDRHWRVRLAIIEYI 421
Score = 29.1 bits (62), Expect = 3.3
Identities = 36/184 (19%), Positives = 68/184 (36%)
Frame = +2
Query: 35 YXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLD 214
Y ++ ++P + L + R + ++ L + ++ S + D P VV
Sbjct: 77 YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKESDIVDWFVP-VVKRLAA 135
Query: 215 TNAIIREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGKIAAHL 394
+ + H+A + L E+ + +L +DD +R LGK AA +
Sbjct: 136 GEWFTARVSSCGLFHIAYPSAPDQLKAELRTIYGQL-CQDDMPMVRRAAASNLGKFAATV 194
Query: 395 HPQIRQKVLVSAFVRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPALCPLTIDP* 574
+ ++S F T+D R V AA + + LP + + D
Sbjct: 195 EQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254
Query: 575 KQVR 586
+VR
Sbjct: 255 WRVR 258
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 143 FIMHLQNSTVNDQIFPQVVNGFLDTNA-IIREQTVKSIVHLASKLNYNNLNVE 298
F +HL + TVND + QV LD + +R TV + ++ S + N L E
Sbjct: 142 FFIHLDDDTVNDDVMAQVTFSLLDRHRNPVRSHTVTTTLYNFSVASSNALGFE 194
>10_08_0124 + 14992399-14993478
Length = 359
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 143 FIMHLQNSTVNDQIFPQVVNGFLDTNA-IIREQTVKSIVHLASKLNYNNLNVE 298
F +HL + TVND + QV LD + +R T+ + ++ S N + L E
Sbjct: 80 FFIHLDDDTVNDDVMAQVTFSLLDRHRNPVRSHTITTTLYNFSVPNSSALGFE 132
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 KDDQGGIRTNTTVCLGKIAAHLHPQI--RQKVLVSAFVRSTRDPFPPARQAGVLALAATQ 502
KD + +R + LG+ A HL P+I + ++ + + DP ++ ALAA
Sbjct: 389 KDQEQMVRGAASFALGQFAEHLQPEILSHYESVLPCILNALEDPSDEVKEKSYYALAA-- 446
Query: 503 QYFLLSEVANRXLPALCPL 559
++ LP L PL
Sbjct: 447 ---FCEDMGENILPYLDPL 462
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = -1
Query: 596 RQHREPVSMDRLSADIEPARXCWPLLIARSTVAWRPAPGLRLVAPVGRDPSWSERTQTQA 417
++HR P S R AR C PLL+A V+ RL P + T+
Sbjct: 34 KRHRHPASAARRRLLRRAARLCAPLLLATLAVSLLLYESYRLSPSSPTPPPAANLTRVDH 93
Query: 416 PSAVSADAGA 387
AV A GA
Sbjct: 94 TGAVRAADGA 103
>03_05_0185 + 21713500-21714291
Length = 263
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 534 LLATSDSKKYCCVAASARTPACRAGG 457
L++T D ++ V ++ RTP CRAGG
Sbjct: 158 LMSTEDGEEEDDVLSTGRTPGCRAGG 183
>09_04_0462 + 17788869-17789031,17789284-17789579
Length = 152
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 506 TVAWRPAPGLRLVAPVGRDPSWSERTQTQAPSAVSADAGAPL 381
T+ + G++L V DPS+S + A SAV+A A L
Sbjct: 105 TIPGHCSSGMKLAVNVNGDPSYSAASSPAAASAVAAAAAGAL 146
>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 28.7 bits (61), Expect = 4.4
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 6/200 (3%)
Frame = +2
Query: 14 LCLSXANYXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIM-HLQNST--VNDQI 184
LCL +D QI V++ F S +S L + +L + +QI
Sbjct: 814 LCLGEIGRRKDLSNHAQIENIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQI 873
Query: 185 FPQVVNGFLDTNAIIREQTVKSIVHLA-SKLNYNNLNVEVLRHFARLQSKDDQGGIRTNT 361
Q +L +++ +S+ H S+L +N+ + F +S+++ G+R
Sbjct: 874 DNQQKKQYLLLHSLKEVIARQSVDHTGQSELQDSNIEKILALLFNHCESEEE--GVRNVV 931
Query: 362 TVCLGKIAAHLHPQIRQKVLVSAFVRSTRDPFPPARQAGVLAL--AATQQYFLLSEVANR 535
CLGKIA I + L+ A T P R +A+ + ++ + E+
Sbjct: 932 AECLGKIAL-----IEPRKLIPALKERTSSPAANTRATVAIAIKYSIVERPGKIDEIMYS 986
Query: 536 XLPALCPLTIDP*KQVRDAA 595
+ L D + VR AA
Sbjct: 987 EISTFLMLIKDSDRHVRRAA 1006
>06_01_0810 + 6111962-6112507
Length = 181
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 382 SGAPASADTAEGACVCVRSLHEGSLPTGATSRSPGAGRHATVLLAIRSGQQ 534
S +P+SA ++ + S EGS + +++P GR A + + +R +Q
Sbjct: 48 SPSPSSASSSGSSSSLCSSTGEGSYSAASATQAPPVGRRARLGMLMRQEEQ 98
>05_01_0110 - 741968-742279
Length = 103
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -1
Query: 545 PARXCWPLLIARSTVAWRPAP---GL--RLVAPVGRDPSWSERTQTQAPSAVSADAGAP 384
P R PLL + + + PAP GL R+ A R +W R +P A +A GAP
Sbjct: 3 PPRADAPLLGSHAPLPGGPAPPRRGLERRIAARGRRAVAWEPRAAVGSPRATTARPGAP 61
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 62 QIVPCVVKLFASNDRTTRSRLLQQLDQ 142
Q++ C +FA D T + RLL LDQ
Sbjct: 854 QMLLCYGSIFACQDNTVKIRLLNNLDQ 880
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 572 MDRLSADIEPARXCWPLLIARSTVAWRPAPGLRLVAPVGRDP---SWSERTQTQAPSAVS 402
M L A I PAR L A ++ R P +RL P+ P S S T +P+A +
Sbjct: 1 MATLLASISPAR-----LSASASHLLRALPRIRLRRPLASAPRMSSSSSSTTAASPAAAA 55
Query: 401 ADAG 390
AD G
Sbjct: 56 ADGG 59
>05_01_0200 - 1437807-1437971,1438615-1438736,1438933-1439224
Length = 192
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 494 RPAPGLRLVAPVGRDP-SWSERTQTQAPS 411
RP P LRL+ P+G P S + T +QAPS
Sbjct: 36 RPPPLLRLLDPIGLRPFSAAAATASQAPS 64
>02_05_0692 + 30973171-30973908
Length = 245
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 459 HRRDKPESWRWPPRNSTSCYQKW 527
H+R +P WR PR+S+ ++W
Sbjct: 40 HQRQRPSVWRQRPRSSSQRRRQW 62
>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
Length = 492
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 491 PAPGLRLVAPVGRDPSWSERTQTQAPSAVSADAGA 387
PA R+V G D SW + APS A AGA
Sbjct: 157 PAVTQRVVIDTGSDVSWVQCEPCPAPSPCHAHAGA 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,654
Number of Sequences: 37544
Number of extensions: 353074
Number of successful extensions: 1258
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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