Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0180
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)               160   1e-39
SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_8790| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  28   5.9  
SB_12436| Best HMM Match : HEAT (HMM E-Value=1.7e-05)                  28   5.9  
SB_46305| Best HMM Match : SSDP (HMM E-Value=2)                        28   7.8  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              28   7.8  

>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score =  160 bits (388), Expect = 1e-39
 Identities = 95/225 (42%), Positives = 132/225 (58%), Gaps = 26/225 (11%)
 Frame = +2

Query: 20  LSXANYXQDPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVV 199
           L      +  +Y+K+IVPCVVKLF+S DR TR +LLQQL+ F+ HL+   V++QIFP V 
Sbjct: 148 LQVGKLLESEEYEKRIVPCVVKLFSSTDRATRIQLLQQLELFVQHLKPQVVDEQIFPHVA 207

Query: 200 NGFLDTNAIIREQTVKSIVHLASKLN-YNNLNVEVLRHFARLQSKD---------DQGGI 349
            GF DT   +REQTVK+   L   ++ Y  +   ++    R++ +D         ++ G 
Sbjct: 208 LGFGDTVPAMREQTVKAYGTLDDFVSSYERIQSPLIASNGRIRRQDIGEFDGAAANRSGD 267

Query: 350 RTNTTVCL-------GKIAAHL---------HPQIRQKVLVSAFVRSTRDPFPPARQAGV 481
           R +  + L         I +HL           + RQKVLVSAF+R  RDPFPPAR AGV
Sbjct: 268 RNSLAMLLLTPKLSEKTINSHLLKHFAKLQMDQETRQKVLVSAFLRPFRDPFPPARTAGV 327

Query: 482 LALAATQQYFLLSEVANRXLPALCPLTIDP*KQVRDAAFKTIRGF 616
           +A   T +++ L +VA R LPALCPLT+DP K+VRD  FK ++ F
Sbjct: 328 MAFCVTSEFYPLKDVAARILPALCPLTVDPEKKVRDQTFKAVKLF 372


>SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 510 KYCCVAASARTPACRAGGKGSLVERTNADTSTFCRIC 400
           KY  VAA AR P CR    G  +   N D S+   +C
Sbjct: 41  KYGLVAAEARIPGCRGPRGGRGLTEDNFDPSSITHVC 77


>SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 156 RCIMNWSSCCRSLDLVVLSLEANSLTTQG 70
           R  +NWS CCR+L++ +LS   +    QG
Sbjct: 199 RMRINWSPCCRALNIKLLSDTTDLFEAQG 227


>SB_8790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 525 TSDSKKYCCVAASARTPACRAGGKGSLVERTNADTST 415
           T D  + CC A  A  P    GG+  L  R   DT T
Sbjct: 239 TGDLARACCEALRAHLPGLYEGGRTCLALRVTMDTET 275


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -3

Query: 555 GHRAGKXLLATSDSKKYCCVAASARTPAC------RAGGKGSLVERTNAD 424
           GH  G  + + S   +  C+   ARTP C      R+GG  +L   T A+
Sbjct: 418 GHLTGHVMSSQSGLDRRACMVLCARTPTCASFNYQRSGGTCALSNATRAE 467


>SB_12436| Best HMM Match : HEAT (HMM E-Value=1.7e-05)
          Length = 334

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 50  DYQKQIVPCVVKLFASND--RTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNA 223
           DY   +VP VVKLF SN+   + R   L+ LD+    L  +    +I   +V   LD+ +
Sbjct: 208 DYLHLLVPPVVKLFDSNEIPLSVRKCALETLDRLSESLDLTDFASRIIHPIVR-TLDSCS 266

Query: 224 IIREQTVKSIVHLASKL 274
            +R   + ++  L  +L
Sbjct: 267 ELRGTAMDTLSSLVFQL 283


>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
          Length = 848

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 454 LPTGATSRSPGAGRHATVLLAIRSGQQXLAGSMSADNRSIETGSR 588
           L  G TS SP       V  A+ +GQ+ L   +  D+R++ TGS+
Sbjct: 560 LTRGTTSASPDGDSTGRVTWAM-NGQRPLMPKVMTDSRTLVTGSK 603


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 107 TTRSRLLQQLDQFI----MHLQNSTVNDQIFPQVVNGFLDTNAIIREQTVKSIV-HLASK 271
           TT+S LLQ + Q I    ++   ST +  + P + N     + I      KS++ H+ ++
Sbjct: 765 TTQSTLLQPVFQLIELLDLNRTTSTHHKSVIPHITNPLYQASQIRYTTHNKSVIPHITNQ 824

Query: 272 LNYNNLNVEVLRHFARLQ 325
           L ++   +   RH   +Q
Sbjct: 825 L-HHTYKIRYTRHHKSIQ 841


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,691,985
Number of Sequences: 59808
Number of extensions: 394809
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)