Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0180
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical pr...   243   8e-65
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    28   5.1  
Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical p...    28   6.8  
U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical
           protein W07G4.3 protein.
          Length = 820

 Score =  243 bits (595), Expect = 8e-65
 Identities = 112/191 (58%), Positives = 147/191 (76%)
 Frame = +2

Query: 44  DPDYQKQIVPCVVKLFASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNA 223
           + +YQ+ IVPC+ KLF S DRTTR +LL+++D+F  HL    +ND+IF  + +GFLDTN 
Sbjct: 305 EAEYQRTIVPCLCKLFGSPDRTTRVKLLERIDEFAPHLTPQILNDKIFGNLTSGFLDTNP 364

Query: 224 IIREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGKIAAHLHPQ 403
            +RE TVK++V LA KLNYNNLNVE++++ ARLQ  D+ GGIRTNTT+CLGKI   + P 
Sbjct: 365 AVRESTVKAMVSLAEKLNYNNLNVELMKYLARLQGGDEHGGIRTNTTICLGKIGHLIAPA 424

Query: 404 IRQKVLVSAFVRSTRDPFPPARQAGVLALAATQQYFLLSEVANRXLPALCPLTIDP*KQV 583
            RQ +L+SAF R+ +DPF P+R A VLAL+ATQQ++ L E++NR +P+L PLT DP KQV
Sbjct: 425 KRQGILISAFTRALKDPFAPSRMASVLALSATQQFYPLVEISNRIVPSLIPLTCDPEKQV 484

Query: 584 RDAAFKTIRGF 616
           RD AFK IRGF
Sbjct: 485 RDQAFKAIRGF 495


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
            protein Y48G9A.1 protein.
          Length = 1725

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 182  IFPQVVNGFLDTNAIIREQTVKSIVHLASKLNYNNLNVEVLRH 310
            I PQ++NG  ++N+ +R  +  ++VH A K+  N    E  R+
Sbjct: 1646 IVPQLINGCKESNSQVRAASELALVH-ALKMTQNEDRFEAYRN 1687


>Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 276 FSLEAR*TIDFTVCSLIIAFVSKKPFTTCGKIWS--LTVEFCRCIMNWSSC 130
           F+L     +DF VCS+ + F++K   +  G      L +  C+C++    C
Sbjct: 24  FTLVQNAAVDFRVCSIGLVFINKHLLSGIGAELDIPLFITCCQCLVTIGIC 74


>Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 276 FSLEAR*TIDFTVCSLIIAFVSKKPFTTCGKIWS--LTVEFCRCIMNWSSC 130
           F+L     +DF VCS+ + F++K   +  G      L +  C+C++    C
Sbjct: 24  FTLVQNAAVDFRVCSIGLVFINKHLLSGIGAELDIPLFITCCQCLVTIGIC 74


>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 660 LLSSGLQKLSLVYREKPLIVLKAASRTCFYGSIVSGHRAGKXLLATSDSKKYCCVAASAR 481
           LLS  + +L+  Y E      K A  TCF  ++V+    G  L  TSD +   C     R
Sbjct: 326 LLSQNVLQLAHQYEENCYETEKEAKMTCFDSALVT-ISDGNLLFRTSDEQAASCSPIDGR 384


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +2

Query: 89  FASNDRTTRSRLLQQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNAIIREQTVKSIVHLAS 268
           F S      S + QQ  Q IM      +N+  FPQV+N  +D      EQ +K I     
Sbjct: 264 FKSAWNAINSTITQQDAQRIMEKHLKMMNETSFPQVINEMIDF-----EQNLKKISMCNR 318

Query: 269 KLNYNNLNVEVLRHFARLQSK 331
            L +  L+ ++ +  +R  +K
Sbjct: 319 SLKWLFLHSKISQKTSRPLNK 339


>AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical
           protein F54A3.3 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = +2

Query: 212 DTNAIIREQTVKSIVHLASKLNYNNLNVEVLRHFARLQSKDDQGGIRTNTTVCLGKIAAH 391
           D NAI+RE TVK   H A+K       +E+    AR Q ++   G  T+  +  G++ AH
Sbjct: 64  DGNAILREITVK---HPAAK-----SMIEI----ARTQDEETGDG-TTSVIILAGEVMAH 110

Query: 392 LHPQIRQKVLVSAFVRSTR 448
               + QK   +  +++ R
Sbjct: 111 AQTYLEQKTHPTLIIKAYR 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,943
Number of Sequences: 27780
Number of extensions: 293481
Number of successful extensions: 841
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)