Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0180
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 128 QQLDQFIMHLQNSTVNDQIFPQVVNGFLDTNA 223
           Q+LDQ  +  Q +  ND  F    NG   +N+
Sbjct: 124 QKLDQKFIFPQENNYNDNYFYSKSNGSNSSNS 155


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 153 CIMNWSSCCRSLDLVVLSLEANSLTTQGTICFW 55
           C M + S      +  + +E+ S TTQ  +  W
Sbjct: 132 CAMKFESYPHDTQICSMMIESLSHTTQDLVFIW 164


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 IIREQTVKSIVHLASKLNYNN 286
           ++RE+ +   VH+  KL ++N
Sbjct: 164 LVREEILFDTVHVTFKLTFDN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,139
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)