Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0179
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   9.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 433 WKKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYI 537
           W KG D+      VY D     +   SVE +  Y+
Sbjct: 468 WHKGMDESGSPYMVYGDQWVGYDDSESVEKKVNYV 502


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 249  FFDILIIPLGIKKIFHIFFSIRK*FVLNKADRCCS 145
            FF ++++   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 249  FFDILIIPLGIKKIFHIFFSIRK*FVLNKADRCCS 145
            FF ++++   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 249  FFDILIIPLGIKKIFHIFFSIRK*FVLNKADRCCS 145
            FF ++++   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 249  FFDILIIPLGIKKIFHIFFSIRK*FVLNKADRCCS 145
            FF ++++   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 659 LVASCLAPTAVSKWPSMRGSRSPA 588
           L++  L      KW  MR + SPA
Sbjct: 71  LLSEALTNLPGEKWKEMRATLSPA 94


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 365 RMSNGRCRPTVKLPL*SNSRGLS 433
           R+   RC P   LPL   +R LS
Sbjct: 179 RLREERCDPDRPLPLDQKARDLS 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,764
Number of Sequences: 336
Number of extensions: 3662
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)