Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0179
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 120 3e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 29 0.49
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.65
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 29 0.65
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 28 1.1
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.1
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.0
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.0
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 2.0
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.6
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 4.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 6.1
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 120 bits (288), Expect = 3e-28
Identities = 76/187 (40%), Positives = 107/187 (57%), Gaps = 1/187 (0%)
Frame = +1
Query: 118 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKS 297
K LLLDIEGT SISFVKDKLFPYA + +++ ++ ++ LR+L K+
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDE------NLRELG-----KT 51
Query: 298 VEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVY 477
E E L+ N++ + K K +QG IWKKGY+ ++ H++
Sbjct: 52 PE----------------EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLF 94
Query: 478 DDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEA 654
DV+PA++ RS++ G ++YIYSSGSV AQKL F S AG+LL G++DT +G K E
Sbjct: 95 PDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLKTEC 152
Query: 655 TSYTAIV 675
SY IV
Sbjct: 153 GSYVKIV 159
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 196 ENVKDFLDAQWDD-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
EN L Q+DD E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.65
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 271 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 444
L ++D EK ++ P E + KE +G V N +SSD+ ++ + L +
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635
Query: 445 YDKGDIKGHVYDDVLPALE 501
D GDIK D VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 184 PYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSV 300
PY+ E VK+ L + +EDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 259 ALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLI 432
AL KL + +VT G A KED+ + ++ MS+ RKVA LK+L+G I
Sbjct: 329 ALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +1
Query: 112 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQE 291
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 292 KSV 300
+
Sbjct: 242 DEI 244
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 457 DIKGHVYDDVLPALEQWRSVEGQKIYI 537
D G+VY+D + L++ + G KIYI
Sbjct: 118 DEDGYVYEDTMKHLDKITEITGAKIYI 144
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 331 HPLREW*PVLQHSSPD 284
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 675 DNGS-VTGSFLFSTYSSVEMAIDERK*VPSR*LAKKKFLGLDG 550
D+GS + +FL Y + E + P L K+FLGLDG
Sbjct: 7 DSGSDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -2
Query: 173 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 18
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -3
Query: 640 HLQQCRNGHR*EEVGPQQMTGQKEVSGLGRIQRSRCKSSDPLLNAIVQE 494
+L C +G + ++GP M +VS LGRI+ ++ +A++QE
Sbjct: 165 NLYGCGDGRK-GQLGPVVMKTVNKVSFLGRIEHAQAVVCGVQFSAVLQE 212
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 583 SSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKI 684
SSA +L I+G F+ A+GA + TA+++ I
Sbjct: 491 SSAPTILTDINGDFEMALGASGGSRIVTAVLDSI 524
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +1
Query: 436 KKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLID 615
++ YD + + YD ++ EQ+ + GQ+ ++ S G Q Q++ ++ D L+
Sbjct: 535 RRVYDAAKL-ANAYDFIMTLPEQFSTNVGQRGFLMSGG--QKQRIAIARAVISDPKILLL 591
Query: 616 GHFDTAVGAKQEATSYTAI 672
+A+ +K E A+
Sbjct: 592 DEATSALDSKSEVLVQKAL 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,330
Number of Sequences: 5004
Number of extensions: 64868
Number of successful extensions: 229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -