Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0179
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 171 3e-43
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 166 1e-41
06_01_0608 - 4399252-4399894,4401640-4402427 31 0.68
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 30 1.6
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 29 3.6
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 29 3.6
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 4.8
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 4.8
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 28 6.3
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 28 6.3
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 28 8.4
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 171 bits (417), Expect = 3e-43
Identities = 85/178 (47%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Frame = +1
Query: 109 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIED 285
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE + LR ED
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEED 332
Query: 286 QEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 465
+ + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG IW+ G++ +++
Sbjct: 333 LKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQ 392
Query: 466 GHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVG 639
G V+DDV AL+ W + G K+YIYSSGS +AQ+LLFG ++ GDL + G FDT G
Sbjct: 393 GVVFDDVPEALKHWHA-SGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTG 449
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 166 bits (404), Expect = 1e-41
Identities = 94/210 (44%), Positives = 132/210 (62%), Gaps = 5/210 (2%)
Frame = +1
Query: 73 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQW-DDEDVKE 249
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + E+ +
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
Query: 250 AVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQL 420
V LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQL
Sbjct: 950 DVALLRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQL 1008
Query: 421 QGLIWKKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSA-GD 597
QG IW++G+D G+++ VYDD AL +WR+ K YIYSSGS +AQ+L+F ++A GD
Sbjct: 1009 QGRIWRRGFDSGELRSEVYDDAADALRRWRA----KAYIYSSGSREAQRLIFANTAAHGD 1064
Query: 598 LLPLIDGHFDTAVGAKQEATSYTAIVEKIG 687
L + G FDT +GAK+E +SY I + +G
Sbjct: 1065 LRDHLCGFFDTTIGAKREVSSYYEIWQTLG 1094
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +1
Query: 184 PYAEENVKDFLDAQWDDEDVKEAVNA---LRKLAIEDQEKSVEGLVT 315
PY E++++ LD + D+EDV+ + +A L K+ +E + L+T
Sbjct: 371 PYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLIT 417
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 30.3 bits (65), Expect = 1.6
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +1
Query: 61 GSVEMAKENT-----VIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQ 225
G +E+A++NT V+ D K VL IEG +T + D L + EE + +D+
Sbjct: 251 GLLELARDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDA---DDLSAHREE--RQLVDSL 305
Query: 226 WDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE 342
W KE N L +EK GLV +PGEDA ++
Sbjct: 306 W-----KECYNEPSSL----REK---GLVVLPGEDAPQQ 332
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 64 SVEMAKENTV-IGDIVKKSKVLL--LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDD 234
SV+MA E +V V+ ++ L + +E T+++ +K+ LFP E + A+W+D
Sbjct: 479 SVQMALERSVGYSGRVEAARATLDQVKVEDIDTNVAVLKELLFPLIEIGKRLLFLAEWED 538
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/98 (16%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +1
Query: 232 DEDVKEAVNALRKLAIED-QEKSVEGLVTIPGEDASK--EDQIEGLVKNVKWQMSSDRKV 402
D+D++ ++A+R I + + ++ ++ + +D++ + K++ + + +
Sbjct: 401 DKDLEAIMSAIRSGDISNFDDDHIQKVLKVRFKDSTPPPSESSSSRKKSISTAETIFKDI 460
Query: 403 APLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQWRSV 516
+K+ W YD+ +G++ DD +P + W ++
Sbjct: 461 KSIKKNDTSHWHSLYDEARNRGYIRDDDIPDMVDWEAL 498
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 349 IEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 465
+EG +K + Q+ D+KVA K + I GY++GD K
Sbjct: 462 LEGTLK-IDQQIEGDQKVANKKVTEEEILTNGYEQGDAK 499
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 97 GDIVKKSKVLLLDIEGTTTSISFVKD--KLFPYAEENVKDFLDAQWDDEDVKEAVNALRK 270
G I ++ K L++D +F +D ++F N + L + E VKE K
Sbjct: 238 GFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNRQTVLFSATQTEQVKE----FAK 293
Query: 271 LAIEDQEKSVEGLVTIPGEDASKEDQIEGL 360
L+ E E+S V + +DA +EGL
Sbjct: 294 LSFEKNEESTSKPVYVGVDDAETNATVEGL 323
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 583 SSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKIGCKAEEI 705
S A ++PL++G T ++E S +VE +G EE+
Sbjct: 1066 SYAAPVVPLLNGFLTTFTETEKEMISVERVVEYVGIPQEEL 1106
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 241 VKEAVNALRKLAIEDQEKSVEGL-VTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQ 417
V+EA+ AL ++ED++ V+GL V + E + IE +++S + Q
Sbjct: 5 VEEAIAALSTFSLEDEQPDVQGLAVLLSSERYATNSPIE-YSDVAAYRLSLGEDTKAINQ 63
Query: 418 LQGLIWKKGYDKGDIKGHVYDDVLPALEQ 504
L LI ++G + + + Y + AL Q
Sbjct: 64 LNTLI-QEGKEMASLL-YTYRSCVKALPQ 90
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 292 KSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGY-DK--GDI 462
K+ EG V I + A + L + WQ S + + +L+ L W Y DK +I
Sbjct: 736 KTTEGCVEINVDGAQLRIMLTNLKVSPVWQKVSPQDNIFICELRILTWGDVYVDKVITEI 795
Query: 463 KGHVYDDVLPALEQ 504
KG +YD + + Q
Sbjct: 796 KGDLYDSPIDSKNQ 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,412,035
Number of Sequences: 37544
Number of extensions: 426453
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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