Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0179
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4) 96 3e-20
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_57533| Best HMM Match : Vicilin_N (HMM E-Value=2.6) 29 3.7
SB_24737| Best HMM Match : KID (HMM E-Value=0.096) 29 3.7
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43) 29 3.7
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 29 4.9
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_38536| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23) 28 6.5
SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25) 28 6.5
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 28 8.5
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 28 8.5
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 28 8.5
SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53) 28 8.5
>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
Length = 157
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +1
Query: 325 EDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 504
E A +E L+ + M DRK LK LQG+IW++GY GD GH+Y DVLP+LE+
Sbjct: 14 EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73
Query: 505 WRSVEGQKIYIYSSGSVQAQKLLFGQS 585
W+S +G +Y+YSSGSV AQKLLFG S
Sbjct: 74 WKS-QGIDLYVYSSGSVAAQKLLFGYS 99
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 304 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYD 450
G + PGED +K+D I+ L + ++ + S R++ +L+GL++ K D
Sbjct: 201 GHLAPPGEDKTKQDLIQNLGR-LRQRRRSIREIQNRDELEGLMYVKQGD 248
>SB_57533| Best HMM Match : Vicilin_N (HMM E-Value=2.6)
Length = 212
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +1
Query: 169 KDKLFPYAEENVKDFLDAQWDDE--DVKEAVNALRKLAIEDQEKSV---EGLVTIP---G 324
K++ EE+V + A+ + E V+E+ + ++++E+ + EG VT+P G
Sbjct: 84 KERKLDIKEESVLREMQAEHEPELARVRESHSRENATHVKNEERKLDTEEGQVTVPQSPG 143
Query: 325 EDASKEDQIEGLVKNVKWQMSSDRKVAPLK 414
ED Q+E L +VK ++ +K +K
Sbjct: 144 EDKKLVVQVEKLPLDVKTKVQPLKKTGEMK 173
>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
Length = 636
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +1
Query: 169 KDKLFPYAEENVKDFLDAQWDDE--DVKEAVNALRKLAIEDQEKSV---EGLVTIP---G 324
K++ EE+V + A+ + E V+E+ + ++++E+ + EG VT+P G
Sbjct: 472 KERKLDIKEESVLREMQAEHEPELARVRESHSRENATHVKNEERKLDTEEGQVTVPQSPG 531
Query: 325 EDASKEDQIEGLVKNVKWQMSSDRKVAPLK 414
ED Q+E L +VK ++ +K +K
Sbjct: 532 EDKKLVVQVEKLPLDVKTKVQPLKKTGEMK 561
>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
Length = 565
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 193 EENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
+EN K + W DED E+ + + D+ EG+ I + +ED
Sbjct: 373 QENAKKTREGAWHDEDSHESNPQFKLKLLRDESVLKEGVTFISQKPVDQED 423
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 119 LLFLTISPITVFSFAISTDPHQLCRNYF-YVFQNLFD*NS 3
L FL SP VFSF + P LC +F + Q L NS
Sbjct: 253 LFFLCWSPTVVFSFLVLFGPPGLCMKHFRFTSQFLVQSNS 292
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Frame = +1
Query: 193 EENVKDFLDAQWDDE--DVKEAVNALRKLAIEDQEKSV---EGLVTIP---GEDASKEDQ 348
E++V+ + A+ + E V+E+ + ++++E+ + EG VT+P GED Q
Sbjct: 915 EDSVRREMQAEHEPELARVRESHSRENATHVKNEERKLDTEEGQVTVPQSPGEDKKLVVQ 974
Query: 349 IEGLVKNVKWQMSSDRKVAPLK 414
+E L +VK ++ +K +K
Sbjct: 975 VEKLPSDVKTKVQPLKKTGEMK 996
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 127 LLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAI--EDQEKSV 300
+LD + ++ +K +LFP E+++ + +D + +E K+ + A E+ EK
Sbjct: 604 ILDPDSVHYCVAALKPELFPVFEKHLSEEIDKEKKEEQKKKKAAEAKAAASKKEEDEKKA 663
Query: 301 EGLVTIPGEDASKEDQIE 354
E + +++ Q++
Sbjct: 664 EASKAGSSQQPAEDMQVD 681
>SB_38536| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)
Length = 389
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 339 FRSILSGNGNQSFNTLLLILDSKLPQSVHCFFDILIIPLGIK 214
FR + F T L+I+ + L CF IL+ PLG++
Sbjct: 181 FRRKWESQDIKMFRTFLIIIGTFLVSFTPCFIVILLDPLGVR 222
>SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 379 QMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQ 558
+M+S R A + L GL++ G G ++ D P +QWR + + G+
Sbjct: 323 EMNSRRCRAGVSVLDGLVYAVGGFNGSLRVRTVDCYDPIKDQWRPAASMEARRSTLGAAV 382
Query: 559 AQKLLF 576
LL+
Sbjct: 383 LNGLLY 388
>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
Length = 357
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 136 IEGTTTSISFVKDKLFPYAE--ENVKDFLDAQWDDEDVKEAVN 258
I G + V D L+ Y E ENV+D+L+A ++ KE ++
Sbjct: 214 IAGLGQAAQLVVDHLYEYQEHMENVRDYLEASLTEKFGKECIH 256
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 597 PTSSHRWPFRHCCRC 641
P HRW +RHC C
Sbjct: 301 PEQDHRWNWRHCTEC 315
>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 402
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/93 (23%), Positives = 44/93 (47%)
Frame = +1
Query: 76 AKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 255
+++ V + K+++ +IE + KDK A E ++ + + + VK+
Sbjct: 298 SQQQVVESEACAKAELRQREIERKGKMVEMNKDKAAKEAREKLRLRRERE---QFVKDRA 354
Query: 256 NALRKLAIEDQEKSVEGLVTIPGEDASKEDQIE 354
NAL+ + D + +EGL T S++D+ E
Sbjct: 355 NALKDADMYDGLRILEGLETSEDYCVSEDDEWE 387
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 255 HCFFDILIIPLGI-KKIFHIFFSIRK*FVLNKADRCCSSFNIKKQNFAFLNNIADYSILF 79
HC ++ + G+ + +F+ S+R N+A+R C F + A ++ + +
Sbjct: 285 HCGTELGFVQHGVFRNVFNAAASVRYVIKFNEANRLCQVFGARLATIAQVDQAWKFGLFE 344
Query: 78 CHF 70
C +
Sbjct: 345 CRY 347
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 199 NVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE-DQIEGLVKN 369
+VKD L D+E+ K +N+L K A D + V +V+ GE+ ++ D + L N
Sbjct: 331 DVKDALVLSPDNEEAKTLMNSLHKRA-NDSKLQVSCIVSKQGEEKNQGLDGVNRLATN 387
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 58 CGSVEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDK 177
CG+ AK+ I D KS V +L+ E TTT +S KD+
Sbjct: 29 CGNASTAKK---IFDRDVKSYVFILEGESTTTKMSIPKDE 65
>SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)
Length = 297
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 273 KLPQSV-HCFFDILIIPLGIKKIFHIFFSIRK*FVLNKADRCCSSFN 136
++PQ V H F+ +IP +K + H F I K + + +R FN
Sbjct: 219 QMPQDVMHVLFEG-VIPYTVKLVLHYFIRIEKQLTIQQLNRKLIGFN 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,533
Number of Sequences: 59808
Number of extensions: 475392
Number of successful extensions: 1373
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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