Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0179
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical pr... 181 4e-46
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 32 0.35
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 30 1.4
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 29 2.5
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical pr... 29 3.3
U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase ... 29 3.3
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 3.3
Z79756-3|CAB02121.1| 527|Caenorhabditis elegans Hypothetical pr... 28 5.7
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 28 5.7
U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated p... 28 5.7
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 28 5.7
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 28 5.7
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 28 5.7
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 28 5.7
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 28 5.7
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 28 5.7
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical
protein F58H1.3a protein.
Length = 492
Score = 181 bits (441), Expect = 4e-46
Identities = 99/197 (50%), Positives = 131/197 (66%), Gaps = 2/197 (1%)
Frame = +1
Query: 124 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVE 303
LLLDIEGT TSISFVKD+LFPYA ENV ++L+ +D+ + V LR +A + E V
Sbjct: 11 LLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHIADQQAENDV- 69
Query: 304 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDD 483
+V I +++ IE + KNV+ + D+K+ P+K LQGLIW++ Y +GD+KGHVY D
Sbjct: 70 AVVRIR---EPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIWEEAYQRGDVKGHVYPD 126
Query: 484 VLPALEQWRSVEGQK--IYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEAT 657
VLP L + VE +K IYIYSSGSV AQKLLF S GD+ ++ G+FDT +G K E+
Sbjct: 127 VLPVL---KIVENRKIPIYIYSSGSVHAQKLLFANSIEGDMTKILYGYFDTNIGLKGESN 183
Query: 658 SYTAIVEKIGCKAEEIL 708
SYT I E+I EIL
Sbjct: 184 SYTKISERIKIPPSEIL 200
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 283 DQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQ 417
D EK + +D +ED+++ + ++ Q SSD+KV+ K+
Sbjct: 100 DDEKPASSSSKLAADDDDEEDELDAFMAGIEKQASSDKKVSEQKE 144
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 343 DQIEG-LVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHV--YDDVL-PALEQWR 510
D + G L+KN SS +KV + Q + D G++ HV YDD + L W
Sbjct: 773 DNLHGILIKNPSLHRSSSKKVVFIDQNKASAAASAGDSGEVPAHVRAYDDAIEEPLANWS 832
Query: 511 SVEGQ 525
+ Q
Sbjct: 833 KLTDQ 837
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 2/145 (1%)
Frame = +1
Query: 109 KKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQ 288
K ++ D+ G + + + K P EE+ DFL QW + + +ED+
Sbjct: 386 KLRNMITADMTGNISRV-LTRKKPAPKLEES--DFLRGQWTTSTIASNQRKRKVATLEDE 442
Query: 289 EKSVEGLVTIPGEDASKEDQI--EGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDI 462
E+ V +++ P K E V W +S R + K+ + K D D
Sbjct: 443 EEDVFNMLSSPNLSQRKRKATLQENTPSGVGW-TASPRSSSFRKRRASTLRNKNADVTDG 501
Query: 463 KGHVYDDVLPALEQWRSVEGQKIYI 537
++ VL + + G ++
Sbjct: 502 NNYLSHLVLNDVTMTQPYTGLNAFV 526
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 97 GDIVKKSKV--LLLDIEGTTTSISFVKDKLFPYAEENVKDFLD 219
G I++KSK+ L+ I TT VKD L YA++ V +D
Sbjct: 226 GSIMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLID 268
>Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 184 PYAEENVKDFLDAQWDDEDV------KEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
P+ +N D +A +D+ + KEAVN L+ ++ K + +V+ GEDA +
Sbjct: 576 PFEADNEDDLFEAILNDDVLYPVWLSKEAVNILKAFMTKNAGKRLGCVVSQGGEDAIR-- 633
Query: 346 QIEGLVKNVKWQMSSDRKVAP 408
+ + W R+V P
Sbjct: 634 -AHPFFREIDWDALESRQVKP 653
>Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 184 PYAEENVKDFLDAQWDDEDV------KEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
P+ +N D +A +D+ + KEAVN L+ ++ K + +V+ GEDA +
Sbjct: 576 PFEADNEDDLFEAILNDDVLYPVWLSKEAVNILKAFMTKNAGKRLGCVVSQGGEDAIR-- 633
Query: 346 QIEGLVKNVKWQMSSDRKVAP 408
+ + W R+V P
Sbjct: 634 -AHPFFREIDWDALESRQVKP 653
>U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase C
protein.
Length = 707
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 184 PYAEENVKDFLDAQWDDEDV------KEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
P+ +N D +A +D+ + KEAVN L+ ++ K + +V+ GEDA +
Sbjct: 576 PFEADNEDDLFEAILNDDVLYPVWLSKEAVNILKAFMTKNAGKRLGCVVSQGGEDAIR-- 633
Query: 346 QIEGLVKNVKWQMSSDRKVAP 408
+ + W R+V P
Sbjct: 634 -AHPFFREIDWDALESRQVKP 653
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 187 YAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE-DQIEGLV 363
++EE + ++Q E +K +RK+ IED EK ++ + + A+ E + +
Sbjct: 382 FSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEIQEFHDKI 441
Query: 364 KNVKW--QMSSDRK 399
K ++ Q+SS+ K
Sbjct: 442 KQLELEVQLSSENK 455
>Z79756-3|CAB02121.1| 527|Caenorhabditis elegans Hypothetical
protein F53C11.4 protein.
Length = 527
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +1
Query: 70 EMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKE 249
E N V G KKSKV+ + + + +S L A E+ +LD DD D
Sbjct: 43 EWVVPNDVTGLNAKKSKVVKIRFHPSVSKLSSEGSALHQAACESALKYLDLLLDDSDWTR 102
Query: 250 AVNALRKLAIEDQEKSVEGL 309
N L + +K +E L
Sbjct: 103 KTNHDDDLFGKQIDKIIEYL 122
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 695 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 561
AL F +M L L+ T +S PS+ G +S D P +W
Sbjct: 276 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 320
>U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated
protein 83, isoform b protein.
Length = 975
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 193 EENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 372
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 201 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 260
Query: 373 KWQ 381
KW+
Sbjct: 261 KWE 263
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 193 EENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 372
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 373 KWQ 381
KW+
Sbjct: 327 KWE 329
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 193 EENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 372
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 373 KWQ 381
KW+
Sbjct: 327 KWE 329
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 538 YSSGSVQAQKLLFGQSSAGDLLPLIDG 618
YS+G V +K + GQ S+ D PL+ G
Sbjct: 78 YSTGQVTTRKSVLGQVSSADQFPLLYG 104
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 196 ENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEK----SVEGLVTIP 321
+NVK LD W +E++ AV A + ED+E+ EG+ +P
Sbjct: 377 KNVKVHLDDDWHEEELVGAVGAEEEEDEEDEEEEDEDEEEGMADVP 422
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 695 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 561
AL F +M L L+ T +S PS+ G +S D P +W
Sbjct: 276 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 320
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 695 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 561
AL F +M L L+ T +S PS+ G +S D P +W
Sbjct: 304 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 348
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 598 LLPLIDGHFDTAVGAKQEATSYTAIVEKIGCKAEEIL 708
+LP+I G QEA T I+EK+ K+ I+
Sbjct: 2923 ILPMIQNKMKQKPGTDQEAAWQTEILEKLDAKSHNIV 2959
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 598 LLPLIDGHFDTAVGAKQEATSYTAIVEKIGCKAEEIL 708
+LP+I G QEA T I+EK+ K+ I+
Sbjct: 2932 ILPMIQNKMKQKPGTDQEAAWQTEILEKLDAKSHNIV 2968
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = -1
Query: 483 IVVHVSLDVSFIITFFPDKPLELLQRGNFTVGRHLPF--DILNQTL------DLILFRSI 328
+++HVS ++ FI+ F +P + G + H P ++ N + D+ LF SI
Sbjct: 35 LIIHVSNNIFFILLFIYKRPRKPENPGG-SENVHAPIFRELYNLSFLCVIFDDICLFTSI 93
Query: 327 LSGNGNQSFNTLLLIL 280
L N++ + LI+
Sbjct: 94 LGNEKNEASGFIFLIM 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,723
Number of Sequences: 27780
Number of extensions: 364618
Number of successful extensions: 1142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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