Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0179
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase fa... 177 8e-45
At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa... 119 2e-27
At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase fa... 119 2e-27
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 34 0.080
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.11
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 33 0.19
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 33 0.19
At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5)... 32 0.32
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 32 0.43
At5g15560.1 68418.m01822 hypothetical protein 31 0.75
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.75
At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family pr... 30 1.3
At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR... 29 2.3
At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains... 29 2.3
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR... 29 2.3
At5g37475.1 68418.m04510 translation initiation factor-related s... 29 3.0
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 29 3.0
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 29 3.0
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof... 29 4.0
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 28 5.3
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 28 5.3
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 28 5.3
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 28 7.0
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi... 28 7.0
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 27 9.2
>At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 507
Score = 177 bits (430), Expect = 8e-45
Identities = 90/188 (47%), Positives = 119/188 (63%)
Frame = +1
Query: 124 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVE 303
++LDIEGTTT I+FV D LFPYA ENV L+ + + +E + LR ED + V
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDIKLLRAQVEEDLREGVT 327
Query: 304 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDD 483
G V IP D KE I +V NV+ + +DRK+ LK+LQG IW+ G++ ++K V++D
Sbjct: 328 GAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQGHIWRTGFECDELKAIVFED 387
Query: 484 VLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEATSY 663
V ALE+W S G K+YIYSSGS AQKLLFG + GDL I G FDT +G K+E+ SY
Sbjct: 388 VADALEKWHS-SGIKVYIYSSGSRLAQKLLFGNTDYGDLRKYISGFFDTTIGNKKESRSY 446
Query: 664 TAIVEKIG 687
I E +G
Sbjct: 447 KEIKETLG 454
>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 418
Score = 119 bits (287), Expect = 2e-27
Identities = 58/130 (44%), Positives = 81/130 (62%)
Frame = +1
Query: 124 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVE 303
++LDIEGTTT I+FV D LFPYA ENV L+ + + +E + LR ED + V
Sbjct: 284 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDIKLLRAQVEEDLREGVT 343
Query: 304 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDD 483
G V IP D KE I +V NV+ + +DRK+ LK+LQG IW+ G++ ++K V++D
Sbjct: 344 GAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQGHIWRTGFECDELKAIVFED 403
Query: 484 VLPALEQWRS 513
V ALE+W S
Sbjct: 404 VADALEKWHS 413
>At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 402
Score = 119 bits (287), Expect = 2e-27
Identities = 58/130 (44%), Positives = 81/130 (62%)
Frame = +1
Query: 124 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVE 303
++LDIEGTTT I+FV D LFPYA ENV L+ + + +E + LR ED + V
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDIKLLRAQVEEDLREGVT 327
Query: 304 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDD 483
G V IP D KE I +V NV+ + +DRK+ LK+LQG IW+ G++ ++K V++D
Sbjct: 328 GAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQGHIWRTGFECDELKAIVFED 387
Query: 484 VLPALEQWRS 513
V ALE+W S
Sbjct: 388 VADALEKWHS 397
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 34.3 bits (75), Expect = 0.080
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 208 DFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQ-- 381
D L A +K+ N +A D+ EG + + +DA Q+EG+VK +KW+
Sbjct: 740 DLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVR-DDAETIQQVEGMVKAMKWEVR 798
Query: 382 MSSDRKVAPLKQLQGLIWK 438
M+ ++ L +Q IW+
Sbjct: 799 MTYSKEKEGLLSVQKSIWR 817
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 33.9 bits (74), Expect = 0.11
Identities = 30/120 (25%), Positives = 60/120 (50%)
Frame = +1
Query: 94 IGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKL 273
+ D V+K ++ +T S +K P E+ K + D + DD+D +EAV+ L L
Sbjct: 1 MADTVEKVPTVVESSSSSTVEASNSAEKTEPTTEK--KKWGDVE-DDDDEEEAVSELNSL 57
Query: 274 AIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDK 453
+I+++EK + ++ P ED++ + G D ++P + ++GL + ++K
Sbjct: 58 SIKEEEKP-DSILEEP-EDSNIKAVTSGDTPYTSASRFEDLNLSP-ELMKGLYVEMKFEK 114
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 33.1 bits (72), Expect = 0.19
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +1
Query: 241 VKEAVNALRKLAIEDQEKSVEG-LVTIPGEDASKEDQIE-GLVKNVKWQMSSDRKVAPLK 414
V+EA+ AL ++ED++ V+G V + E A+ + IE V + +S D K L
Sbjct: 5 VEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKA--LN 62
Query: 415 QLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 504
QL LI ++G + I + Y + AL Q
Sbjct: 63 QLNTLI-QEGKEMASIL-YTYRSCVKALPQ 90
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 33.1 bits (72), Expect = 0.19
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +1
Query: 241 VKEAVNALRKLAIEDQEKSVEG-LVTIPGEDASKEDQIE-GLVKNVKWQMSSDRKVAPLK 414
V+EA+ AL ++ED++ V+G V + E A+ + IE V + +S D K L
Sbjct: 5 VEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKA--LN 62
Query: 415 QLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 504
QL LI ++G + I + Y + AL Q
Sbjct: 63 QLNTLI-QEGKEMASIL-YTYRSCVKALPQ 90
>At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 368
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 VKK-SKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 255
VKK V+L +++ TTT+I V D++ E ++FL+ + D DVK A+
Sbjct: 223 VKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFLEQKLSD-DVKPAI 272
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = +1
Query: 58 CGSVEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDE 237
C S+E+ KE + ++ L IE + F+ ++ +E K+ + +W+
Sbjct: 506 CKSLEIKKEERE--EYLRLQSELKSQIEKSRVHEEFLSKEVENLKQE--KERFEKEWEIL 561
Query: 238 DVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 345
D K+AV ++ I ++++ E + GE KE+
Sbjct: 562 DEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEE 597
>At5g15560.1 68418.m01822 hypothetical protein
Length = 239
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/105 (24%), Positives = 45/105 (42%)
Frame = +1
Query: 172 DKLFPYAEENVKDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQI 351
+KL + E N+ L + DDE E L ED+EK +G T +ED
Sbjct: 8 NKLVNHIERNILSLLSVKNDDESKGEEYKPLVASGKEDEEKQEDGNKT------KREDDE 61
Query: 352 EGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDV 486
+ + +K+ S ++ ++ + Q D D+K + DD+
Sbjct: 62 SNIEEFIKFN-SKEQDISNVTSKQKDKATTEDDDDDVKEIIQDDI 105
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +1
Query: 67 VEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVK--DKLFPY--AEENVKDFLDAQWDD 234
VE+ KE + I + K + D + + + K D + P A E + F+ ++W+
Sbjct: 206 VELTKEESKIVQRILKGEAPHADFDPYAPYVEWFKHDDAIHPLSSAPEPKRRFIPSKWEA 265
Query: 235 EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ 348
+ V + V A+RK I+ + E V + D S DQ
Sbjct: 266 KKVVKIVRAIRKGWIKFDKPEEEPNVYLLWGDDSTSDQ 303
>At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 363
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 148 TTSISFVKDKLFPYAEENVKDF-LDAQWDDEDVKEA---VNALRKLAIEDQEKSVE-GLV 312
++SI +KL EE +K L +Q D E VKE V+ L + + E GLV
Sbjct: 261 SSSIDKSDEKLRQLLEERIKGITLMSQEDLETVKEERQLVDLLWSICYNEPSSLREKGLV 320
Query: 313 TIPGEDASKED 345
+PGEDA D
Sbjct: 321 VLPGEDALPPD 331
>At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 980
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/96 (28%), Positives = 44/96 (45%)
Frame = +1
Query: 205 KDFLDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQM 384
K+FL ++ +D K +N L K IE++ K + L+ + D K +Q+E L +W
Sbjct: 266 KEFLPIIFNQKDRK--INHLWK--IEERLKKQKVLIVLG--DVDKVEQLEALANETRWFG 319
Query: 385 SSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLP 492
R + K Q L+ G H+Y+ LP
Sbjct: 320 PGSRIIVTTKDKQILV-------GHEINHIYEVKLP 348
>At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains
Pfam profiles: PF02309 AUX/IAA family and PF02362: B3
DNA binding domain
Length = 638
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +1
Query: 328 DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQW 507
+ K++ EG K V+ + SS + Q+QG+ + D +KG Y++++ +E+
Sbjct: 500 EEKKQEPAEGSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKG--YNELIDDIEKL 557
Query: 508 RSVEGQ 525
++G+
Sbjct: 558 FDIKGE 563
>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1219
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 153 CCSSFNIKK--QNFAFLNNIADYSILFCHFDRSTPALPELL 37
C S NI+ ++F LNN+ + + FC +S P LP+ L
Sbjct: 884 CLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNL 924
>At5g37475.1 68418.m04510 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 225
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 214 LDAQWDDEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVK 375
L + WDDEDV E N ++ E+ + +V E A K+ ++ + K VK
Sbjct: 18 LKSNWDDEDVDE--NDIKDSWEEEDVSAPPPIVKPASEKAPKKPAVKAVEKKVK 69
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 491 GSTSSYTCPLMSPLS*PFFQISPWSCFRGATLRSDDICHLTF 366
GS +SY S +S ++SPW C T ++C TF
Sbjct: 403 GSLNSYKTWKCSDVSGTSLKVSPWPCSELRTTGGSNLCSSTF 444
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 232 DEDVKEAVNALRKLAIEDQEKSVEGLVTIPGED-ASKEDQIEGLVKNVK 375
+ED + ++ + K A D + SVE L +P E DQ + LV+++K
Sbjct: 409 NEDEEVDIDTVEKDAFSDSDMSVEELRYLPAEPIPDTNDQQDNLVESIK 457
>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 629
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 21 ILKYIKVVPAELVWICRNGKREYCNRRYC 107
+LKY+K + WICR +++ R+ C
Sbjct: 201 VLKYVKKNLKWIAWICRTCSKKFSTRQAC 229
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 405 GNFTVGRHLPFDILNQTLDLILFRSILSGNGNQSFNTLLLILDSKLPQSVHCFFDILIIP 226
G + LP DI + ++L IL G GN + + L++ +P+S F +++ P
Sbjct: 363 GQQLIYEKLPSDISER--HVLLLDPIL-GTGNSAVQAIRLLISKGVPESNIIFLNLISAP 419
Query: 225 LGIKKIFHIFFSIR 184
G+ + F I+
Sbjct: 420 EGVNVVCKKFPRIK 433
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 405 GNFTVGRHLPFDILNQTLDLILFRSILSGNGNQSFNTLLLILDSKLPQSVHCFFDILIIP 226
G + LP DI + ++L IL G GN + + L++ +P+S F +++ P
Sbjct: 363 GQQLIYEKLPSDISER--HVLLLDPIL-GTGNSAVQAIRLLISKGVPESNIIFLNLISAP 419
Query: 225 LGIKKIFHIFFSIR 184
G+ + F I+
Sbjct: 420 EGVNVVCKKFPRIK 433
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 405 GNFTVGRHLPFDILNQTLDLILFRSILSGNGNQSFNTLLLILDSKLPQSVHCFFDILIIP 226
G + LP DI + ++L IL G GN + + L++ +P+S F +++ P
Sbjct: 363 GQQLIYEKLPSDISER--HVLLLDPIL-GTGNSAVQAIRLLISKGVPESNIIFLNLISAP 419
Query: 225 LGIKKIFHIFFSIR 184
G+ + F I+
Sbjct: 420 EGVNVVCKKFPRIK 433
>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 957
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 67 VEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFL 216
+++ +N +++K L ++ +TTS S KL EEN+ FL
Sbjct: 481 IDVPHQNDTAVSVLEKMASTLEELHASTTSNSAFGTKLLEEGEENIGHFL 530
>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 706
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 496 LEQWRSVEGQKIYIYSS-GSVQAQKLLFGQSSAGDLLPL---IDGHFDTAVGAKQEATSY 663
LEQ +V I +YS GS++ ++FG++ D++ L I+G+ + G +EA
Sbjct: 442 LEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEH--GKSKEAIDL 499
Query: 664 TAIVEKIGCKAEEI 705
K+G + + +
Sbjct: 500 FEKSLKVGFRPDSV 513
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 226 WDDEDVKEAVNALRKLAIEDQEKSVEGLVT 315
W+ DVK A+ ALRKL DQ V ++T
Sbjct: 832 WERSDVKGAIGALRKLT--DQSVDVISILT 859
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,165
Number of Sequences: 28952
Number of extensions: 347054
Number of successful extensions: 1168
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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