Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0178
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.4  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   7.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.5  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 154 RAYFFNGSFSVLKSPVFSLFXSCSSAFVL 68
           R +   G F + K+ +FSL  + +  FV+
Sbjct: 733 RTFSAGGFFDIRKNLIFSLIANVAMYFVI 761


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
 Frame = +3

Query: 90  LXNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVP-----NAEDKLKV 254
           + + +   D  +    LK Y  C+L K +   +  K K  +  A        N + K  V
Sbjct: 22  IPDNIDIDDILSNERLLKNYVNCLLDKGRCTPEGKKLKSTIPEALSTDCAKCNEKVKANV 81

Query: 255 EKLIDACLANK 287
            K++   + NK
Sbjct: 82  RKVLHHLIDNK 92


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 360 RERASGLSRGSISRNSRLFGEG 295
           R   S  ++G  SRNS+  G G
Sbjct: 397 RNNTSSRAQGETSRNSKNSGNG 418


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 297 PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 398
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,235
Number of Sequences: 336
Number of extensions: 2940
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)