Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0178
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   1.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = +3

Query: 114 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPN------AEDKLKVEKLIDA- 272
           DF  EN+   + +L + +  ++  KDG + +D+    + N      A +K K E   DA 
Sbjct: 84  DFMDENKENGRISLGLSVIVRVTIKDGAYHEDIGYGSIDNCRGKASAFEKCKKEGTTDAL 143

Query: 273 --CLANKGNS 296
              L N GNS
Sbjct: 144 KRALRNFGNS 153


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 466 NLVWCYYSNFNLYLXDKFCFVVVTYSIENRNLIFFCVH 579
           N  W Y  ++NL L  K  FV+V      R      VH
Sbjct: 104 NYKWIYRKDYNLCLNQKIAFVLVMLHFMKREYESIFVH 141


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 547  ENRNLIFFCVHH 582
            EN+N + FC+HH
Sbjct: 1439 ENKNYVLFCIHH 1450


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 613 PRNIKRDKQSYDEHKRKLNFCSQLNMLQQQNKIYRXD 503
           P   ++     D H +KLN  SQLN + +   + + D
Sbjct: 321 PLESRKLHSKVDVHSKKLNALSQLNPILRSENVLQND 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,567
Number of Sequences: 5004
Number of extensions: 50915
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)