Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0178
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z47812-3|CAA87790.1|  158|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 99  KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 263
           +L   +++    PL+   +C+ I   + TKD K K    L+K+ N   +DK+ V +L   
Sbjct: 61  RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119

Query: 264 -IDACLANK 287
            I+A L NK
Sbjct: 120 EIEARLENK 128


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 120 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 260
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 120 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 260
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z47812-3|CAA87790.1|  158|Caenorhabditis elegans Hypothetical
           protein T05H10.3 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 424 CLSRRYHGYIGEYCNLVWCYYSN--FNLYLXD--KFCFVVVTYSIENRN 558
           C    + G   EYC++V C  S+  F  Y+    + CF  +TY +E RN
Sbjct: 62  CWQEDHDGEEREYCDIV-CPKSHTVFISYIDQGHRACFNFITYQVEKRN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,942
Number of Sequences: 27780
Number of extensions: 285731
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)