Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0178
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro... 31 0.54
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 30 1.3
At4g02710.1 68417.m00366 kinase interacting family protein simil... 30 1.3
At5g17240.1 68418.m02020 SET domain-containing protein contains ... 29 2.9
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 28 5.0
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai... 28 5.0
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr... 28 6.7
At2g04230.1 68415.m00410 F-box family protein contains F-box dom... 27 8.8
At1g33670.1 68414.m04165 leucine-rich repeat family protein cont... 27 8.8
>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
P450, Arabidopsis thaliana; supported by cDNA:
gi_15293092_gb_AY050980.1_
Length = 484
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 357 ERASGLSRGSISRNSRLFGEGCCLCWPGKRQS 262
ERA+G S G +SR C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +3
Query: 102 LKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLA 281
LK + + N +K C+++ S+ F+K + L +P +D+ + L++ CL
Sbjct: 497 LKLAEAQRMNTDSRKAIFCVIMSSEDYID--AFEKLLRL-DLPGKQDREIMRVLVECCLQ 553
Query: 282 NKGNSPHQTAWNYVKCYHEKDPKHAL 359
K + T C H+K+ K L
Sbjct: 554 EKAFNKFYTVLASKLCEHDKNHKFTL 579
>At4g02710.1 68417.m00366 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1111
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 378 DYVFTRRERASGLSRGSISRNSRLFGEGCCL 286
DYVFT RE A +S+G+ + L EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811
>At5g17240.1 68418.m02020 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 491
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 138 LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 314
LKK L + + + LMT + KD+ L+ N + L +++ CL + + ++ W
Sbjct: 57 LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116
Query: 315 NYVKCYH 335
Y +H
Sbjct: 117 -YPYLFH 122
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 448 NHDIV*INMSELFSTNEVWNGWVGLCVYKKRACFGSFS 335
NH ++ I++++ +S V NG GLC Y R F + S
Sbjct: 21 NHMLLYIHLTQSYSYCAVCNGDYGLCYYCSRCNFQAHS 58
>At1g66130.1 68414.m07505 oxidoreductase N-terminal
domain-containing protein similar to AX110P [Daucus
carota] GI:285739; contains Pfam profile PF01408:
Oxidoreductase family NAD-binding Rossmann fold
Length = 364
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 201 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 314
KK L + P A+D ++EK+++AC N T W
Sbjct: 95 KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132
>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 934
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 653 AASCLSLYEMKEITKKHQTR 594
AA C +LYE++E TKK + R
Sbjct: 590 AAHCFTLYEIEEATKKFEKR 609
>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 231 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 338
++ KL++ KL D L + +P + WN KC E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368
>At1g33670.1 68414.m04165 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to receptor kinase-like
protein GB:AAB82755 GI:2586083 from [Oryza
longistaminata] (Science 270 (5243), 1804-1806 (1995))
Length = 455
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 233 IRHFSQSDVLLEFPVLGHQLRFD 165
IR F+Q D ++EF G++L+FD
Sbjct: 362 IRFFNQMDFMVEFHAPGNKLQFD 384
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,217
Number of Sequences: 28952
Number of extensions: 258064
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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