Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BCJ1 Cluster: Chromosome undetermined scaffold_10, wh...    33   6.0  

>UniRef50_A0BCJ1 Cluster: Chromosome undetermined scaffold_10, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_10,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 427

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 465 FLLLMDLIIA*TLIV*IMNFSQIDLYFSTHYFLFALSTLGFLKVITFALL 614
           F+L + +++   LIV I + +  D Y      ++AL+T GFL   T+ L+
Sbjct: 175 FILFLTIMLTLFLIVQIQHLADTDDYLIIELLIYALNTFGFLVFSTYLLV 224


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,343,599
Number of Sequences: 1657284
Number of extensions: 9431954
Number of successful extensions: 17580
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17578
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)