Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   8.7  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   8.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 226 C*YFFQIMHKRYIKSISIY-LSLRFMAFPFRFRQCQVYLILC 104
           C Y+F  MH  +  +  I+ + L F+   + F  C + ++LC
Sbjct: 257 CIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF-YCALIILLC 297


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 95  AGFVNEQGHRYSLRI 51
           A F  EQG+RY  R+
Sbjct: 270 ARFTVEQGYRYRFRV 284



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 543 NISQFVKSSLFKQLKFMLLSNPSKEEINEP 454
           N+S+ +K     Q+K  L+  P K+ +  P
Sbjct: 554 NVSEILKMDQNGQIKRNLVDAPLKDTVTVP 583


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 513 IMNFSQIDLYFSTHY 557
           ++ FS++  YF+TH+
Sbjct: 1   MIKFSKVKSYFTTHH 15


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 513 IMNFSQIDLYFSTHY 557
           ++ FS++  YF+TH+
Sbjct: 1   MIKFSKVKSYFTTHH 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,859
Number of Sequences: 336
Number of extensions: 2674
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)