Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138...    31   1.0  

>02_01_0206 +
           1388149-1388330,1388527-1388629,1388896-1388964,
           1389684-1389803,1390352-1390482,1390840-1390881,
           1390961-1391138,1391241-1391319,1391441-1391610,
           1392503-1392629,1392731-1392846,1392926-1393033,
           1393118-1393180,1393283-1393456,1393814-1393978
          Length = 608

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 555 NVLKNISQFVKSSLFKQLKFMLLSNPSKEE 466
           +VL N+ QFVK S FKQ     L++  KEE
Sbjct: 419 SVLSNMRQFVKYSRFKQFALRALASTLKEE 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,199
Number of Sequences: 37544
Number of extensions: 224406
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)