Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)                  28   5.7  
SB_8030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)                    27   9.9  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)               27   9.9  

>SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)
          Length = 136

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 196 RYIKSISIYLSLRFMAFPFRFRQC 125
           RY+KS+    S+RFM   F++ QC
Sbjct: 29  RYMKSVRYMKSVRFMKSVFQYNQC 52


>SB_8030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 504 IV*IMNFSQIDLYFSTHYFLFALSTLGFL 590
           +V I+ F+ +DL+  T+YF+F+LS    L
Sbjct: 35  VVCIVIFANVDLHTVTNYFIFSLSIADLL 63


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 457 ASMVYGTRSTTRTKWSVNLRDLVSNAHSYILK*IPYN*SIYILICEAKTLYPFLR 293
           AS +  T ST R +W   LR ++S    Y+L        + + +     L P++R
Sbjct: 355 ASNMVSTSSTQRKEWGEELRRVISRDFPYVLLTCEQLVGVCLFVFARPHLVPYIR 409


>SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)
          Length = 558

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 558 NNVLKNISQFVKSSLFKQLKFMLLSNPSKEEINEP 454
           NN L++ +  +K S   Q+K    S+PSK E   P
Sbjct: 48  NNALRSSNSSLKKSTASQIKVSSSSSPSKSEKRPP 82


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 573 IKQKGNNVLKNIS-QFVKSSLFKQLKFMLLSNPSKEE 466
           +K+ G   L  +  + +++SL   +KF L  NPSKEE
Sbjct: 431 LKRAGALELSEVEVRMIRASLLGLVKFYLQQNPSKEE 467


>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  VHEARYRKQSIKY-T*HWRNLKGNAINLRDR 170
           +H++R RK+ + + T  WR L+    +LRDR
Sbjct: 158 IHQSRRRKRRVNHVTRAWRRLREGVRSLRDR 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,678
Number of Sequences: 59808
Number of extensions: 291094
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)