Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-853|AAF58946.1|  188|Drosophila melanogaster CG8800-PA ...    30   3.1  
AY061402-1|AAL28950.1|  675|Drosophila melanogaster LD33040p pro...    29   5.4  
AE014298-1930|AAF48292.1|  675|Drosophila melanogaster CG9938-PA...    29   5.4  

>AE013599-853|AAF58946.1|  188|Drosophila melanogaster CG8800-PA
           protein.
          Length = 188

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
 Frame = -1

Query: 558 NNVLKNISQFVKSSLFKQLK-FMLLSNPSKEEINEPLW---CME-LEAPRELNG 412
           NN++K+ S+F + +  + L+  +++ NP  E ++EP W   C++ L   R+L+G
Sbjct: 124 NNLIKDWSEFNRLAEIESLEDLVVVGNPLSEGLDEPTWRAECIKRLPTIRKLDG 177


>AY061402-1|AAL28950.1|  675|Drosophila melanogaster LD33040p
           protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 540 ISQFVKSSLFKQLKFMLLSNPSKEEINEPLWCMEL 436
           I   +KS + +Q    L  NP++E+I+E + C+EL
Sbjct: 462 ICGLIKSGIGQQSDLTLPLNPNQEDISERVQCLEL 496


>AE014298-1930|AAF48292.1|  675|Drosophila melanogaster CG9938-PA
           protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 540 ISQFVKSSLFKQLKFMLLSNPSKEEINEPLWCMEL 436
           I   +KS + +Q    L  NP++E+I+E + C+EL
Sbjct: 462 ICGLIKSGIGQQSDLTLPLNPNQEDISERVQCLEL 496


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,852,453
Number of Sequences: 53049
Number of extensions: 421061
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)