Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    30   1.2  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   2.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   2.8  

>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -2

Query: 410 C*FERSSVKCP*LY-LKVNTIQLIYLYINM*SKNFVSLF-TKIARTEEYEIFTLIENIEK 237
           C  ++++V CP    LK+ T+QL+   + +     V++F T+     E EIF L  N   
Sbjct: 287 CENKKTNVMCPVSETLKIKTVQLLKKRLTLNGILAVNVFVTQDNIKSEKEIFELFSNEFN 346

Query: 236 KCTMLIFFSN 207
            C  L +F N
Sbjct: 347 SCFYLEYFKN 356


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 564 KGNNVLKNISQFVKSSLFKQLKFMLLSNP-SKEEINEPLWCMELEAPRELN 415
           KGN+   N +QF  +     L F  LSNP S E I + L+C+  E+P  LN
Sbjct: 417 KGNHY--NCAQFASAQRLDWL-FGRLSNPQSAEGILDVLYCVLTESPEALN 464


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 564 KGNNVLKNISQFVKSSLFKQLKFMLLSNP-SKEEINEPLWCMELEAPRELN 415
           KGN+   N +QF  +     L F  LSNP S E I + L+C+  E+P  LN
Sbjct: 538 KGNHY--NCAQFASAQRLDWL-FGRLSNPQSAEGILDVLYCVLTESPEALN 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,202
Number of Sequences: 27780
Number of extensions: 239332
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)