Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0176
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59780.3 68418.m07494 myb family transcription factor (MYB59)...    27   8.1  
At5g59780.2 68418.m07493 myb family transcription factor (MYB59)...    27   8.1  
At5g59780.1 68418.m07492 myb family transcription factor (MYB59)...    27   8.1  

>At5g59780.3 68418.m07494 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 235

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 573 IKQKGNNVLKNISQFVKSSLFKQLKFMLLSNPSKEEINEPLWCMELE 433
           I Q G NV+K +     S     L F  L++P+ E   E +W M+ +
Sbjct: 166 IDQSGANVIKPVKDNYYSEQSCYLNFPPLASPTWESSLESIWNMDAD 212


>At5g59780.2 68418.m07493 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 214

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 573 IKQKGNNVLKNISQFVKSSLFKQLKFMLLSNPSKEEINEPLWCMELE 433
           I Q G NV+K +     S     L F  L++P+ E   E +W M+ +
Sbjct: 145 IDQSGANVIKPVKDNYYSEQSCYLNFPPLASPTWESSLESIWNMDAD 191


>At5g59780.1 68418.m07492 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 170

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 573 IKQKGNNVLKNISQFVKSSLFKQLKFMLLSNPSKEEINEPLWCMELE 433
           I Q G NV+K +     S     L F  L++P+ E   E +W M+ +
Sbjct: 101 IDQSGANVIKPVKDNYYSEQSCYLNFPPLASPTWESSLESIWNMDAD 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,872
Number of Sequences: 28952
Number of extensions: 207206
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)