Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0173
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.7  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 313 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 221
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLS 120
           +YAC     + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLS 120
           +YAC     + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLS 120
           +YAC     + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLS 120
           +YAC     + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLS 120
           +YAC     + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,514
Number of Sequences: 336
Number of extensions: 2416
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)