Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0173
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.014
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.033
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 31 0.54
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 31 0.54
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 5.0
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88) 27 8.8
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 421 DVVAVSQAPSPESNPDSPLPVTTM 350
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 412 AVSQAPSPESNPDSPLPVTTM 350
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/27 (66%), Positives = 18/27 (66%)
Frame = +3
Query: 3 PVVICLSQXLSHACLXASRIKAIPRMA 83
PVVICLSQ LSHACL S RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 35.5 bits (78), Expect = 0.025
Identities = 18/27 (66%), Positives = 18/27 (66%)
Frame = +3
Query: 3 PVVICLSQXLSHACLXASRIKAIPRMA 83
PVVICLSQ LSHACL S RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 411 PFLRLPLRNRTLIPRYP 361
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 10 LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLSYLDNCGNS 144
L CL A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 10 LYACLKX*AMHVSXQAVLRRYREWLNISVLVPXILLSYLDNCGNS 144
L CL A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 68 DTANGSIYQFWFLXSYSVTWITVVILELIHAIRTLTSDG 184
D NG+I F + W + LE IH + TL DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 430 PSLDVVAVSQAPSPESNPDSPLP 362
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 370 GNQGSIPEREPEKRLPHPRKAA 435
GN+GS + E EK LP P K A
Sbjct: 52 GNEGSEGDGEKEKMLPSPEKKA 73
>SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
Length = 234
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 358 SRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 492
+RVT NQ S ++ RK AQ+T + VT+N ++
Sbjct: 177 ARVTRNQESARVTRKQESARVTRKQVSAQVTRKQESARVTRNQES 221
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 257 WITFADRMVKYRRRIFQM 310
W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,111
Number of Sequences: 59808
Number of extensions: 322533
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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