Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0170
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.5  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   4.6  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   4.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   4.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 195 HRSRWSAMTWFFLFLG 148
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 195 HRSRWSAMTWFFLFLG 148
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 195 HRSRWSAMTWFFLFLG 148
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 195 HRSRWSAMTWFFLFLG 148
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  ATSQIPASPATRSPSISAPHFWTNNRS 103
           AT++ PA+ ++ SPS S+P   +++ S
Sbjct: 27  ATTEAPAAYSSSSPSGSSPQHSSSSAS 53


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  ATSQIPASPATRSPSISAPHFWTNNRS 103
           AT++ PA+ ++ SPS S+P   +++ S
Sbjct: 27  ATTEAPAAYSSSSPSGSSPQHSSSSAS 53


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
          peptide isoform C protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 32 QIPASPATRSPSISAPHF 85
          +I +SPA RSP+    HF
Sbjct: 26 EITSSPAGRSPAFLPHHF 43


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
          peptide isoform B protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 32 QIPASPATRSPSISAPHF 85
          +I +SPA RSP+    HF
Sbjct: 26 EITSSPAGRSPAFLPHHF 43


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
          peptide isoform A protein.
          Length = 140

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 32 QIPASPATRSPSISAPHF 85
          +I +SPA RSP+    HF
Sbjct: 26 EITSSPAGRSPAFLPHHF 43


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 565 LSAGVFNSTFVDCVTSAAW 509
           LS   F++ + DC T+++W
Sbjct: 19  LSCKDFDTLYRDCTTASSW 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,914
Number of Sequences: 336
Number of extensions: 4172
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)