Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0170
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.13
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 29 0.95
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 3.8
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 27 3.8
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 8.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 8.8
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 8.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.8
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 8.8
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.5 bits (68), Expect = 0.13
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +1
Query: 391 TAFTSRELLTTLQIPARTFLAFAVTLRSTIFETILSTTLSTLPMSH---SLQTYC*IHLR 561
T+FT L++ Q+ F + + +L T ++ LST +T+P S+ SLQT + +
Sbjct: 503 TSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIIS 562
Query: 562 LMLFSRH*KFALLFSLPASTMSITRASPINSSS 660
+ S A S PA T SIT ++ +SS
Sbjct: 563 SPIISSS-LTATSTSTPALTHSITPSNTSYTSS 594
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 46 SGNQISEYICSTFLDKQQELDLPSLQVEETSERGAKKKEKPRHGGPATTMSQISGVKRTL 225
S N+ +E+I LD +LD S V+E AKK+++ TT+ S +R L
Sbjct: 350 SANEENEFINHDGLDSSLDLDGDSYMVDENDLNLAKKRKQKALIDRTTTIENGSSKRRLL 409
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 418 TTLQIPARTFLAFAVTLRSTIF--ETILSTTLSTLPMSHSLQTY 543
T L P + + ++ S I +ILS+++ST+P+S SL TY
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTY 666
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 172 DVVFPFSWRRVPKFLRLVRMVSQAPV 95
D++ P +R+P F R +++VS P+
Sbjct: 370 DIILPMDLQRLPAFQRWIQLVSGLPL 395
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 524 DIGSVERVVERIVSNIVLLKVTANAKKVRAGI 429
D G VE V+R V LK+T+ +K+R I
Sbjct: 55 DFGDVEATVDRTVEKRSRLKITSVDRKIRLQI 86
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +1
Query: 613 ASTMSITRASPINSSSTPVPN 675
++T+S+T SP +SS+TP+PN
Sbjct: 181 SNTVSVT--SPASSSATPLPN 199
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 629 SPGPHQSIPRQLQFRTRTNVQRRV 700
+PGP+Q++ R + RTNV V
Sbjct: 743 TPGPNQNLARSIYEELRTNVVNNV 766
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 562 LMLFSRH*KFALLFSLPASTMSITRASPINSSSTP 666
L+ F+RH K+ L LP+ I + SSS P
Sbjct: 90 LLAFTRHLKYYLSLYLPSCKFEICSTNQYFSSSKP 124
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 85 LDKQQELDLPSLQVEETSER 144
L KQ+EL L L VEE +ER
Sbjct: 410 LKKQEELALNKLSVEEVAER 429
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 751 SFCSSLNATARWWFSRTDSSLYISASSELE 662
SFC++ A + ++F+R S Y+SA +E
Sbjct: 24 SFCATSRAFSVFYFTRFKRSAYVSAPFGIE 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,739
Number of Sequences: 5004
Number of extensions: 66387
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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