Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0170
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547     30   2.3  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    29   3.0  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   5.3  
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    28   7.0  
04_04_0667 + 27097741-27098085,27098203-27098547                       28   7.0  
10_01_0131 - 1541964-1542161,1542235-1542390,1543046-1543923,154...    28   9.2  
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    28   9.2  

>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
          Length = 751

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 450 GVCSYLKEHYIRDNPFHNSLHAADVTQSTNVLL 548
           G  SY+ +HY+ D    N+  +ADVTQ++   L
Sbjct: 719 GFLSYVYQHYLDDAKSKNTAGSADVTQTSEAKL 751


>10_01_0132 -
           1601421-1601657,1601761-1601922,1602812-1603721,
           1604587-1604651,1604704-1604746,1605086-1605128,
           1605874-1605955,1606270-1606464,1606567-1606721,
           1611207-1611435,1611538-1611693,1612539-1613476,
           1614946-1614967
          Length = 1078

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 529 CVTSAAWRELWKGLSRI 479
           CV S  WR+LW+ L+RI
Sbjct: 705 CVLSRRWRDLWRSLTRI 721


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 515 CRCHTVYKRTVEYTCA*CCFHATRSLRC-SFRCLRPRCRSPGP 640
           C  H   +R  E  CA C     + LRC + +CL P  R  GP
Sbjct: 422 CGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRCHGP 464


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/56 (37%), Positives = 23/56 (41%)
 Frame = +2

Query: 578 ATRSLRCSFRCLRPRCRSPGPHQSIPRQLQFRTRTNVQRRVSPREPPPCSRIQAAA 745
           ATR  R  F    PR R P    S P   +     +  RR SP  PPP     AAA
Sbjct: 24  ATRR-RLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSPPPPPPPRAAAAAA 78


>04_04_0667 + 27097741-27098085,27098203-27098547
          Length = 229

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +1

Query: 91  KQQELDLPSLQVEETSERGAKKKEKPRHGGPATTMSQIS 207
           KQ++L L ++Q+ E  ER  +++E+  +GG ATT +  S
Sbjct: 106 KQEKLAL-TVQLHELRERLREREERSGNGGAATTAASSS 143


>10_01_0131 -
           1541964-1542161,1542235-1542390,1543046-1543923,
           1544060-1544135,1544162-1544191
          Length = 445

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 529 CVTSAAWRELWKGLSRI 479
           CV S  WR LW+ L RI
Sbjct: 90  CVLSRRWRHLWRSLPRI 106


>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 242 KLFVCVKVLLTPDICDIVVAGPP*RGFSFFLAP-RSEVSSTCKDGKSSSCCLSKNVEQIY 66
           +LF+ +K+   PD  ++ + G    G     AP  SEV S C D   S+ C   + E I 
Sbjct: 520 RLFLELKLGFPPDHSNVKLEG----GCREEAAPVSSEVQSICADHAGSTAC-DASFEYIG 574

Query: 65  SE-IWLPD 45
           ++ IWLP+
Sbjct: 575 TKYIWLPE 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,110
Number of Sequences: 37544
Number of extensions: 480531
Number of successful extensions: 1593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)