Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0170
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0) 142 3e-34
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0) 74 1e-13
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 62 6e-10
SB_59137| Best HMM Match : DUF1417 (HMM E-Value=0.29) 61 8e-10
SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 31 1.3
SB_27805| Best HMM Match : MAM (HMM E-Value=0) 29 5.4
SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7) 29 5.4
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 28 7.1
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 28 9.4
SB_35795| Best HMM Match : Myc-LZ (HMM E-Value=6.7) 28 9.4
SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_18224| Best HMM Match : Maf (HMM E-Value=6.8) 28 9.4
>SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 388
Score = 142 bits (344), Expect = 3e-34
Identities = 62/103 (60%), Positives = 84/103 (81%)
Frame = +3
Query: 444 FLGVCSYLKEHYIRDNPFHNSLHAADVTQSTNVLLNTPALNAVFTPLEVCAALFAACVHD 623
F+ + ++ HY++D PFHN +HAADVTQ+ +VLL+ A + VFT LE+ +A+ A+ VHD
Sbjct: 17 FINYMTLVENHYLKDVPFHNCIHAADVTQTAHVLLSAQAFDNVFTDLEILSAIIASAVHD 76
Query: 624 VDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQND 752
VDHPG+ N FLV ++SE+ALMYNDESVLENHHLAVAF+LLQ++
Sbjct: 77 VDHPGVNNHFLVATNSEMALMYNDESVLENHHLAVAFQLLQHE 119
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 113 bits (272), Expect = 1e-25
Identities = 53/96 (55%), Positives = 67/96 (69%)
Frame = +3
Query: 465 LKEHYIRDNPFHNSLHAADVTQSTNVLLNTPALNAVFTPLEVCAALFAACVHDVDHPGLT 644
++ +Y R N +HNS HAADV +T V L + AV PL+ A+L AA VHDVDHPG T
Sbjct: 185 IEANYHRKNAYHNSTHAADVLHATAVFLAKERVKAVLEPLDEVASLIAAIVHDVDHPGYT 244
Query: 645 NQFLVNSSSELALMYNDESVLENHHLAVAFKLLQND 752
N FL N+ SELA++YND +VLE+HH A+AFKL D
Sbjct: 245 NSFLCNAGSELAILYNDIAVLESHHAALAFKLTARD 280
>SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 511
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Frame = +3
Query: 558 ALNAVFTPLEVCAALFAACVHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFK 737
AL V LE+ + AA +HD DHPG TN FLV + S AL+YND SVLENHH A AF
Sbjct: 197 ALVDVIPLLELLSLYTAAAMHDYDHPGRTNAFLVATLSHQALLYNDRSVLENHHAAAAFT 256
Query: 738 LLQND 752
LL +D
Sbjct: 257 LLMSD 261
>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1879
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = +3
Query: 444 FLGVCSY---LKEHYIRDNPFHNSLHAADVTQSTNVLLNTPALNAVFTPLEVCAALFAAC 614
+L +C + +K++Y R +HN HA +V Q+ +L P++ FT +E A + A
Sbjct: 1368 YLTLCRFVLTIKKNY-RPVMYHNWRHAFNVAQTMYAMLKKPSIGKYFTVIEQYALIVACL 1426
Query: 615 VHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNDG 755
HD+DH G N F + S++ LA +Y+ S +E+HH ++ + G
Sbjct: 1427 SHDLDHRGTNNSFQIKSATPLAQLYS-TSTMEHHHFDQCIMIINSQG 1472
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +3
Query: 489 NPFHNSLHAADVTQSTNVLLNTPALNAVFTPLEVCAALFAACVHDVDHPGLTNQFLVNSS 668
NP+HN HAADVT + + L ++ + LEV L +A +HD++H G TN F +NS
Sbjct: 485 NPYHNDCHAADVTHTVHYFLECMGVSKYLSDLEVFGLLLSAIIHDLEHTGTTNAFHINSR 544
Query: 669 SELALM 686
+LM
Sbjct: 545 DVRSLM 550
>SB_59137| Best HMM Match : DUF1417 (HMM E-Value=0.29)
Length = 421
Score = 61.3 bits (142), Expect = 8e-10
Identities = 40/151 (26%), Positives = 75/151 (49%)
Frame = +1
Query: 4 MLNKELSHFSDSSKSGNQISEYICSTFLDKQQELDLPSLQVEETSERGAKKKEKPRHGGP 183
+LN+EL FS++++SGNQ+S ++ +TF DKQ E+ ET++ +K K
Sbjct: 246 LLNRELKDFSEANQSGNQVSAWVYNTFTDKQLEV--------ETAQ--SKTKRDCIRARS 295
Query: 184 ATTMSQISGVKRTLTHTNSFTGERVPRYGVETPHXXXXXXXXXXXDRWGVDIFRIGDLSC 363
+ ++ + +K + + F G+ + ++W D F +G+ +
Sbjct: 296 RSMVNGVRKLKDCIVFLDQFQGK------TKCILTKFSNKILENVNKWDFDAFALGEATN 349
Query: 364 GRPLTAVAYTAFTSRELLTTLQIPARTFLAF 456
G P+ AV+YT +R+LL +I TF+ +
Sbjct: 350 GHPMLAVSYTILQARDLLKIFKIKPTTFINY 380
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +3
Query: 444 FLGVCSYLKEHYIRDNPFHNSLHAADVTQSTNVLLNTPALN 566
F+ + ++ HY++D PFHN +HAADVTQ+ +VLL+ A +
Sbjct: 377 FINYMTLVENHYLKDVPFHNCIHAADVTQTAHVLLSAQAFD 417
>SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 54.4 bits (125), Expect = 9e-08
Identities = 40/129 (31%), Positives = 59/129 (45%)
Frame = +3
Query: 369 TTHCCRVHSVHITGAVDYSSDTGAYFLGVCSYLKEHYIRDNPFHNSLHAADVTQSTNVLL 548
TTH V G VD + + L V ++ Y RD P+HN HA V S +++
Sbjct: 349 TTHTILCVPVRCKGRVDLET-IARFSLSV----RKCY-RDIPYHNWCHAFSVAHSLWIVI 402
Query: 549 NTPALNAVFTPLEVCAALFAACVHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAV 728
N T E + A HDVDH G N F+++ + LA +Y S +E HH
Sbjct: 403 RD---NKSLTDYEKLSLFIAGICHDVDHRGKNNAFMLHCKTPLANLYT-TSTMEWHHFKQ 458
Query: 729 AFKLLQNDG 755
+L+++G
Sbjct: 459 GVFILESEG 467
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +3
Query: 657 VNSSSELALMYNDESVLENHHLAVAFKLLQND 752
+N+ +ELAL YND S LENHH AVAF +++ D
Sbjct: 858 INARTELALRYNDISPLENHHCAVAFDIMKQD 889
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 30.7 bits (66), Expect = 1.3
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Frame = +1
Query: 376 TAVAYTAFTSRELLTTLQIPARTFLAF-AVTLRSTIFET-ILSTTLSTL-PM-SHSLQTY 543
T + T SR LLT IP+RT L + R+ + T I S TL TL P+ S +L T
Sbjct: 289 TLITLTPIPSRTLLTLTPIPSRTLLTLNPIPSRTLLTLTPIPSRTLITLTPIPSRTLLTL 348
Query: 544 C*IHLRLMLFSRH*KFALLFSL-PASTMSITRASPINSSS----TPVPN 675
I R +L L +L P + ++ +PI S + TP+P+
Sbjct: 349 TPIPSRTLLTLTPIPSRTLLTLNPIPSRNLLTLTPIPSRNLLTLTPIPS 397
Score = 29.9 bits (64), Expect = 2.3
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Frame = +1
Query: 376 TAVAYTAFTSRELLTTLQIPARTFLAFA-VTLRSTIFET-ILSTTLSTL-PM-SHSLQTY 543
T + T SR LLT IP+RT L + R+ + T I S TL TL P+ S +L T
Sbjct: 36 TLITLTPIPSRTLLTLTPIPSRTLLTLTPIPSRTLLTLTPIPSRTLITLTPIPSRTLITL 95
Query: 544 C*IHLRLMLFSRH*KFALLFSL-PASTMSITRASPINSSS----TPVPN 675
I R ++ L +L P + ++ +PI S + TP+P+
Sbjct: 96 TPIPSRTLITLTPIPSRTLITLTPIPSRTLITLTPIPSRTLITLTPIPS 144
Score = 29.5 bits (63), Expect = 3.1
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Frame = +1
Query: 376 TAVAYTAFTSRELLTTLQIPARTFLAFAVTLRSTIFETILSTTLSTLPMSHSLQTYC*IH 555
T + T SR LLT IP+RT L TL T+L TL+ +P S +L T I
Sbjct: 212 TLITLTPIPSRTLLTLTPIPSRTLL----TLTPIPSRTLL--TLTPIP-SRTLLTLTPIP 264
Query: 556 LRLMLFSRH*KFALLFSL-PASTMSITRASPINSSS----TPVPN 675
R ++ L +L P + ++ +PI S + TP+P+
Sbjct: 265 SRTLITLTPIPSRTLITLTPIPSRTLITLTPIPSRTLLTLTPIPS 309
>SB_27805| Best HMM Match : MAM (HMM E-Value=0)
Length = 222
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 60 LRVYLLHIFGQTTGA*LTILTSRRNFGTRRQEKGKTTSWRTSDYDVTNIGC 212
LR Y H+ GQ G + SR+ F Q + +W+ ++ D+T GC
Sbjct: 101 LRFYY-HMLGQHQGTLNVFVGSRKVFS---QSGNQGANWKLAEVDITQSGC 147
>SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7)
Length = 206
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 44 SPATRSPSISAPHFWTNNRSLTYHPY 121
SP++ SPS S+P +T+N L +H Y
Sbjct: 165 SPSSSSPSSSSPSSFTSNYRLHHHHY 190
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 557 CA*CCFHATRSLRCSFRCLRPRCRSPGPHQ 646
CA C H S C C RPRC P P++
Sbjct: 79 CAWKCRHYKCSKLCGEICDRPRCDKPCPYK 108
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 548 EYTCA*CCFHATRSLRCSFRCLRPRCRSPGPHQ 646
E CA C H + C C RPRC P P++
Sbjct: 429 EELCAWKCRHHECTKLCGEICDRPRCDKPCPYK 461
>SB_35795| Best HMM Match : Myc-LZ (HMM E-Value=6.7)
Length = 135
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 536 CRLCDIGSVERVVERIVSNIVL 471
C L D+G ++RV+ R+ S+ V+
Sbjct: 108 CNLTDLGGIDRVLRRVFSSFVI 129
>SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 397 FTSRELLTTLQIPARTFLAFAVTLRSTIFETILSTTLSTLPMS 525
FT+ ++TT+ P T + T+ + I TI+ T T P++
Sbjct: 56 FTTIVIITTITTPITTTIVIITTITTPITTTIVIITTITTPIT 98
>SB_18224| Best HMM Match : Maf (HMM E-Value=6.8)
Length = 603
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 58 ISEYICSTFLDKQQELDLPSLQVEETSERGAKKKEKPRHGGPATTMSQISGVKRTLTHTN 237
+++ +C F+ + L LP L + + S +GA++ G A ++Q K L
Sbjct: 410 LTDQVCEAFVVSLESLRLPLLLLPKNSHKGARQNVSYARGERAHPITQGGTAKCELRTRR 469
Query: 238 SFTGERVPRYG 270
+ T +G
Sbjct: 470 TRTPNHTREHG 480
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,692,279
Number of Sequences: 59808
Number of extensions: 553444
Number of successful extensions: 1821
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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