Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0170
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25830.1 68415.m03099 YebC-related contains Pfam profile PF01... 31 1.1
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 30 1.4
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine... 29 3.3
At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase f... 29 4.4
At4g15396.1 68417.m02353 cytochrome P450-related similar to Cyto... 28 5.8
At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 7.7
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 7.7
At3g03480.1 68416.m00346 transferase family protein similar to h... 28 7.7
>At2g25830.1 68415.m03099 YebC-related contains Pfam profile
PF01709: Domain of unknown function; contains TIGRFAM
TIGR01033: conserved hypothetical protein; similar to
YebC (GI:5771432) [Legionella pneumophila]
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 52 NQISEYICSTFLDKQQELDLPSLQVEETSERGAKKKEK 165
N +S +T LDK +ELD+P VE +R ++K ++
Sbjct: 123 NPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQE 160
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 131 SSTCKDGKSSSCCLSKNVEQIYSEIW 54
SS+C G SSS + + IYSE+W
Sbjct: 42 SSSCSSGSSSSSSSTGSASSIYSELW 67
>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
deaminase homolog DesC [Arabidopsis thaliana]
GI:4836445; similar to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700; contains Pfam profile
PF00383: Cytidine and deoxycytidylate deaminase
zinc-binding
Length = 307
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 519 RQRGESCGKDCLEYSAP*GNCKR 451
RQ + DC+E+ AP GNC++
Sbjct: 94 RQLAVAISSDCIEFGAPCGNCRQ 116
>At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 259
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 459 SYLKEHYIRDNPFHNSLHAADVTQSTNV-------LLNTPALNAVFTPLEVCAALFAACV 617
S+LKE +R + F N+L + ++ N+ L N P N F E+ + C
Sbjct: 25 SFLKEDILRIS-FINNLSLSQPPEANNIFDLFVYILENLPPWNPYFEVYELANKICNRCK 83
Query: 618 HDVDHPGL 641
D+++PGL
Sbjct: 84 MDLEYPGL 91
>At4g15396.1 68417.m02353 cytochrome P450-related similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam profile: PF00067:
Cytochrome P450 {Arabidopsis thaliana}
Length = 475
Score = 28.3 bits (60), Expect = 5.8
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +3
Query: 459 SYLKEHYIRDNP-FHNSLHAADVTQSTNVLLNTPALNAVFTP--LEVCAALFAA---CVH 620
+++KE +R P F SL V ST++ LN P + A LF A V+
Sbjct: 62 TFVKEKVLRHGPVFRTSLFGGKVIISTDIGLNMEIAKTNHIPGMPKSLARLFGANNLFVN 121
Query: 621 DVDHP---GLTNQFLVNSSSELALMYNDESVLENH 716
H LTNQFL + + +L ++ + + ++ H
Sbjct: 122 KDTHKHARSLTNQFLGSQALKLRMLQDIDFLVRTH 156
>At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 270 SIPRHAFAGEAICVCQSPLNTRYL*HRSRWSA 175
S+ FAG +C+C S + ++ R RW A
Sbjct: 424 SVLLSTFAGFGVCICGSSVMVEFVRWRRRWRA 455
>At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 494
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 270 SIPRHAFAGEAICVCQSPLNTRYL*HRSRWSA 175
S+ FAG +C+C S + ++ R RW A
Sbjct: 431 SVLLSTFAGFGVCICGSSVMVEFVRWRRRWRA 462
>At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 270 SIPRHAFAGEAICVCQSPLNTRYL*HRSRWSA 175
S+ FAG +C+C S + ++ R RW A
Sbjct: 424 SVLLSTFAGFGVCICGSSVMVEFVRWRRRWRA 455
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 227 HTQIASPANACRGMELKHRMRK 292
H Q+A+PA + RG LKH ++K
Sbjct: 738 HVQLAAPATSERGAILKHEIQK 759
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 178 GPATTMSQISGVKRTLTHTNSFTGERVPRYGVETP 282
GP ++ G+K L NSF+GE + ETP
Sbjct: 105 GPLPPFFKLPGLKSLLLSNNSFSGEIADDFFKETP 139
>At3g03480.1 68416.m00346 transferase family protein similar to
hypersensitivity-related gene GB:CAA64636 [Nicotiana
tabacum]; contains Pfam transferase family domain
PF00248
Length = 454
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 519 DVTQSTNVLLNTPALNAVFTPLEVCAALFAACVHDVDHPGLTNQFLVNSSSELALMYNDE 698
DV S++VL NTP L T L+ C +FA + G + S ELA +
Sbjct: 141 DVEGSSDVL-NTPLLLVQVTRLKCCGFIFALRFNHTMTDGAGLSLFLKSLCELACGLHAP 199
Query: 699 SV--LENHHL 722
SV + N HL
Sbjct: 200 SVPPVWNRHL 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,193
Number of Sequences: 28952
Number of extensions: 361138
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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