Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0169
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    95   7e-21
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.6  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.6  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   6.0  

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 49/106 (46%), Positives = 69/106 (65%)
 Frame = +3

Query: 63  FGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAGGKEYVVKLADNFSYVDP 242
           +GR +++RYDYE   +E+  ++M  +         +G A   G   +VV  A +F Y DP
Sbjct: 415 YGRTFYSRYDYEELENEAAGKVMDRMRAIADDKSKVGEAVLPG---FVVSEAGDFEYHDP 471

Query: 243 IDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYEAVS 380
           ID S +K QGL I FE+GSRIV RLSGTGSSGAT+R+Y++ +E+ S
Sbjct: 472 IDGSESKHQGLYIKFENGSRIVTRLSGTGSSGATLRLYMEKHESDS 517



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 403 ALGPLVSIALDISRLKQYTGRDEPTVIT 486
           AL P+V  AL+I  L++ TGR EPTVIT
Sbjct: 527 ALKPVVHAALEILALEELTGRKEPTVIT 554


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 612 RSLTTGGPLVLLNKTKYINYF 550
           RSLT GG LVLLN   Y  Y+
Sbjct: 666 RSLTDGGLLVLLNGHSYTVYY 686


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 CDEMMSVLERTITSPGF 167
           C+E+ SVL   +T PGF
Sbjct: 726 CNELQSVLRECVTQPGF 742


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 254 RGQETGPADNIRGRIPHSVPS 316
           RG E   A + RGRIPHSV S
Sbjct: 37  RGVEIIQAWSTRGRIPHSVES 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,614
Number of Sequences: 5004
Number of extensions: 34735
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)